View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_74 (Length: 370)
Name: NF11324A_low_74
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 6359447 - 6359103
Alignment:
| Q |
7 |
tactcgtggatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggaattgctgctggtgttgttggaggcagctgatgt |
106 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6359447 |
tacttgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgt |
6359348 |
T |
|
| Q |
107 |
acaatgattatgcgtggaaaaacgaagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataata |
206 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6359347 |
acaacgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataata |
6359248 |
T |
|
| Q |
207 |
acagtagtagatagagagaattacaaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6359247 |
acagtagtaaatagagagaattacaaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
6359148 |
T |
|
| Q |
307 |
gatatagcttcttgataatctgcatatactcaaggatctgacttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6359147 |
gatatagcttcttgataatctgcatatactcaaggatctgacttc |
6359103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 32857285 - 32857358
Alignment:
| Q |
278 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttc |
351 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||||| ||| ||||| |||||| |||||||| ||||||| |
|
|
| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttc |
32857358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University