View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_79 (Length: 363)

Name: NF11324A_low_79
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_79
NF11324A_low_79
[»] chr6 (26 HSPs)
chr6 (3-232)||(33303724-33303953)
chr6 (226-363)||(33303968-33304105)
chr6 (82-235)||(33261922-33262077)
chr6 (37-235)||(33409248-33409444)
chr6 (78-235)||(33358226-33358391)
chr6 (226-363)||(33387644-33387781)
chr6 (227-363)||(33644940-33645076)
chr6 (61-235)||(33387462-33387632)
chr6 (37-215)||(33398336-33398512)
chr6 (229-310)||(9166286-9166367)
chr6 (151-235)||(33407756-33407840)
chr6 (95-178)||(31563400-31563483)
chr6 (229-363)||(33285081-33285215)
chr6 (228-281)||(33057135-33057188)
chr6 (105-235)||(9166095-9166221)
chr6 (139-235)||(28870711-28870806)
chr6 (151-235)||(33396806-33396890)
chr6 (239-286)||(33409533-33409580)
chr6 (238-319)||(31563226-31563307)
chr6 (139-235)||(33281096-33281192)
chr6 (229-286)||(28870565-28870622)
chr6 (229-286)||(33398651-33398708)
chr6 (132-176)||(33056935-33056979)
chr6 (242-286)||(33262175-33262219)
chr6 (228-300)||(33271375-33271447)
chr6 (226-272)||(33358496-33358542)
[»] scaffold0428 (3 HSPs)
scaffold0428 (78-224)||(5691-5839)
scaffold0428 (139-235)||(13060-13156)
scaffold0428 (238-286)||(5945-5993)
[»] chr2 (3 HSPs)
chr2 (134-235)||(17441437-17441538)
chr2 (239-363)||(17441301-17441425)
chr2 (151-235)||(17446964-17447048)
[»] scaffold1408 (2 HSPs)
scaffold1408 (133-224)||(2-93)
scaffold1408 (238-286)||(199-247)
[»] chr4 (1 HSPs)
chr4 (138-224)||(31499608-31499694)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 33303724 - 33303953
Alignment:
Q  3 atgtcaatgctcttcattgcagattgtattttgcaggttgagactcttcatcaccttcttgtgatctatctgttgtttcttctctgtgaagtttatgact 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33303724 atgtcaatgctcttcattgcagattgtattttgcaggttgagactcttcatcaccttcttgtgatccatctgttgtttcttctctgtgaagtttatgact 33303823  T
Q  103 cttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33303824 cttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagccaagaaattttcttgattca 33303923  T
Q  203 tcattgttaagttgaattcttgcaggtctt 232  Q
    ||||||||||||||||||||||||||||||    
T  33303924 tcattgttaagttgaattcttgcaggtctt 33303953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 33304105 - 33303968
Alignment:
Q  226 aggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304105 aggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggt 33304006  T
Q  326 gaagattttagtttggaggtgaagagttgcgggtatcg 363  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33304005 gaagattttagtttggaggtgaagagttgcgggtatcg 33303968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 33261922 - 33262077
Alignment:
Q  82 ttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttccc 179  Q
    |||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |||      
T  33261922 ttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcga 33262021  T
Q  180 agcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  33262022 agccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgtt 33262077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 33409248 - 33409444
Alignment:
Q  37 aggttgagactcttcatcaccttcttgtgatctatctgttgtttcttctctgt--gaagt--ttatgactcttgagatgaatgattcttgttcttgttcc 132  Q
    ||||||| ||||||| | |||||||||||||| |||||||||||||||| | |  |||||  ||||||||  ||||||||||||||||||||||          
T  33409248 aggttgaaactcttcttgaccttcttgtgatccatctgttgtttcttctttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ 33409341  T
Q  133 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtctt 232  Q
    |||| ||||||||||||  |||||||||||| | |||| ||||||  ||| ||| ||||||| |||||||||||||| |||||||| | ||| |||||||    
T  33409342 ggttgtggttgtgtctcgccttcaattgccataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtaggtctt 33409441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 33358226 - 33358391
Alignment:
Q  78 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtg------tctcatcttcaattgccaaattct 169  Q
    |||||||||||||||||  ||||||||  |||||||||||||||||||||| ||| |||||  ||||| |      ||| |||||||||||||||| |||    
T  33358226 tttcttctctgtgaagtaattatgacttgtgagatgaatgattcttgttctagttgcggttgcggttgcggttgcgtctaatcttcaattgccaaaatct 33358325  T
Q  170 tgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    |||| |||||||  |||| |||||| |||||||||||||| |||||||| ||||| ||||||||||    
T  33358326 tgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtaggtcttgtt 33358391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 33387781 - 33387644
Alignment:
Q  226 aggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggt 325  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    |||||||| ||| |||  |||| | |||||| ||||     
T  33387781 aggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaagggg 33387682  T
Q  326 gaagattttagtttggaggtgaagagttgcgggtatcg 363  Q
     ||| |||  || |||||||||||||||||||||||||    
T  33387681 caagctttgggtatggaggtgaagagttgcgggtatcg 33387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 363
Target Start/End: Original strand, 33644940 - 33645076
Alignment:
Q  227 ggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtg 326  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || |||| ||||| | ||||||||| | |    
T  33644940 ggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaagaatctattttgacatttttgagaggg 33645039  T
Q  327 aagattttagtttggaggtgaagagttgcgggtatcg 363  Q
    ||| | |  || || ||||||||||||| ||||||||    
T  33645040 aaggtctgggtatgaaggtgaagagttgtgggtatcg 33645076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 33387462 - 33387632
Alignment:
Q  61 ttgtgatctatctgttgtttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaat 158  Q
    |||||||| ||||||||||||||||| ||| | |  ||||||||  ||| |||||||||||||||| |      |||| | |||||||| ||||||||||    
T  33387462 ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgt------ggttgtagttgtgtcccatcttcaat 33387555  T
Q  159 tgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||| |||| ||||||  ||| ||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||||    
T  33387556 tgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtt 33387632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 33398336 - 33398512
Alignment:
Q  37 aggttgagactcttcatcaccttcttgtgatctatctgttgtttcttc--tctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttcc 132  Q
    ||||||| ||||||| | |||||||||||||| |||||||||||||||  |||  |||||  ||||||||  ||||||||||||||||||||||          
T  33398336 aggttgaaactcttcgtgaccttcttgtgatccatctgttgtttcttccttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ 33398429  T
Q  133 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagtt 215  Q
    |||| ||||||||||||  |||||||||||| | |||| |||||   ||||||| ||||||| |||||||||||||| |||||    
T  33398430 ggttgtggttgtgtctcgccttcaattgccataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagtt 33398512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 9166367 - 9166286
Alignment:
Q  229 tcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatttt 310  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||    
T  9166367 tcttgttttgaccaaatccagtcacctatggataatctacctcccccgagagtcctacgatgaatttggaaaaatccatttt 9166286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 33407756 - 33407840
Alignment:
Q  151 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| ||||| |||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| | ||| ||||||||||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtt 33407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 31563483 - 31563400
Alignment:
Q  95 ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcc 178  Q
    ||||||||  ||||||||| |||| |||||||  || | ||| ||||||||||||||||||||||||||||||||| |||||||    
T  31563483 ttatgacttatgagatgaaagattattgttctgcttgcagttgtggttgtgtctcatcttcaattgccaaattctttcacttcc 31563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 363
Target Start/End: Complemental strand, 33285215 - 33285081
Alignment:
Q  229 tcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaa 328  Q
    |||| ||| ||||||||||||||| ||||||||||||||| || |  |||||||||||  | ||||||||||||||  || | | ||| ||| |||||||    
T  33285215 tcttattacgaccaaatcaagtcatctatggataatctacctctctagagagtcctatgataaatttgaaaaaatcagttgttacattgttgggggtgaa 33285116  T
Q  329 gattttagtttggaggtgaagagttgcgggtatcg 363  Q
    |||||  || |||||||||| ||||| || |||||    
T  33285115 gatttgggtatggaggtgaacagttgtggatatcg 33285081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 33057188 - 33057135
Alignment:
Q  228 gtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagt 281  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  33057188 gtcttgttacgaccaaatcaagtcacctatggattatctacttaccccgagagt 33057135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 9166095 - 9166221
Alignment:
Q  105 tgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatc 204  Q
    ||||| |||||||||||||||| |||| |||| ||| ||| ||||||| | |||||||||| |||||||| ||| ||| ||  | ||||| |||||||||    
T  9166095 tgagacgaatgattcttgttctggttc-ggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgatttttcgtgattcatc 9166193  T
Q  205 attgttaagttgaattcttgcaggtcttgtt 235  Q
       ||||||||||| ||||| ||||||||||    
T  9166194 ---gttaagttgaactcttgtaggtcttgtt 9166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 28870806 - 28870711
Alignment:
Q  139 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| ||||||||||| ||||| ||||| |||||  ||| ||| ||||||  || |||||||||||||||||||| ||||| ||||||||||    
T  28870806 ggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgtaggtcttgtt 28870711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 33396806 - 33396890
Alignment:
Q  151 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| ||||| |||||||||||  | | ||| ||||||| ||||||||||||||||||||||| | ||| ||||||||||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtt 33396890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 33409580 - 33409533
Alignment:
Q  239 accaaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||    
T  33409580 accaaatcaagtcacctatggctagtctacttcccccgagagtcctat 33409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 31563226 - 31563307
Alignment:
Q  238 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatattttt 319  Q
    |||||||||||||||||||||||||||||||||||| |||| |||   |  |||||||  ||||||||||||| | ||||||    
T  31563226 gaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttt 31563307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 33281096 - 33281192
Alignment:
Q  139 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||||||    
T  33281096 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtt 33281192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 28870565 - 28870622
Alignment:
Q  229 tcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    |||| ||| |||||||||||||||||||||  || |||||||||||||||||| ||||    
T  28870565 tcttattacgaccaaatcaagtcacctatgactagtctacttcccccgagagtactat 28870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 33398708 - 33398651
Alignment:
Q  229 tcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    |||||||| |||| ||||||||||||||||||||  |||| |||||||||| ||||||    
T  33398708 tcttgttacgaccgaatcaagtcacctatggatagcctacatcccccgagattcctat 33398651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 33056935 - 33056979
Alignment:
Q  132 cggttctggttgtgtctcatcttcaattgccaaattcttgcactt 176  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||    
T  33056935 cggttctggttgtgtctcatcttcaattgtcaaaattttgcactt 33056979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 33262219 - 33262175
Alignment:
Q  242 aaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||    
T  33262219 aaatcaagtcacctgtggctaatctacttaccccgagagtcctat 33262175  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 33271447 - 33271375
Alignment:
Q  228 gtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaa 300  Q
    ||||| ||| |||||||||||||||||||||||| |||| | |||| |||| |||||||  | ||||||||||    
T  33271447 gtcttattacgaccaaatcaagtcacctatggatgatcttcctccctcgagggtcctatgataaatttgaaaa 33271375  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 33358542 - 33358496
Alignment:
Q  226 aggtcttgttatgaccaaatcaagtcacctatggataatctacttcc 272  Q
    ||||||| ||| | |||||||||||||||| ||||||||||||||||    
T  33358542 aggtcttattacgcccaaatcaagtcacctgtggataatctacttcc 33358496  T

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Target: scaffold0428 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 5691 - 5839
Alignment:
Q  78 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcact 175  Q
    |||||||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |    
T  5691 tttcttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatt 5790  T
Q  176 tcccagcaaagaaattttcttgattcatcattgttaagttgaattcttg 224  Q
    ||  ||| ||| | ||||| ||||||||||||||||||||||| |||||    
T  5791 tcgaagccaaggatttttcatgattcatcattgttaagttgaactcttg 5839  T

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Target: scaffold0428; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 13156 - 13060
Alignment:
Q  139 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||||||    
T  13156 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtt 13060  T

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Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 5993 - 5945
Alignment:
Q  238 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    |||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  5993 gaccaaatcaagtcacctatggctagtctactttccccgagagtactat 5945  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 17441538 - 17441437
Alignment:
Q  134 gttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttg 233  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||| |||   ||||| ||||||||||||||||||||||| ||||| ||||||||    
T  17441538 gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtaggtcttg 17441439  T
Q  234 tt 235  Q
    ||    
T  17441438 tt 17441437  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 17441301 - 17441425
Alignment:
Q  239 accaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagtt 338  Q
    ||||||||||||||| |||||||||||||||||| | | |||||||||  || ||||  | |||||| |||| | |||||||||||  ||| |||  ||     
T  17441301 accaaatcaagtcacatatggataatctacttccactgtgagtcctatcatgcatttcgagaaatccgttttgaaatttttgaggggcaagctttgggta 17441400  T
Q  339 tggaggtgaagagttgcgggtatcg 363  Q
    |||||||||||||||||||||||||    
T  17441401 tggaggtgaagagttgcgggtatcg 17441425  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 17447048 - 17446964
Alignment:
Q  151 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttgtt 235  Q
    ||||||||| | ||| |||||||||||  ||| ||| ||||||| | ||||| ||||||||||||||| ||||| ||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtt 17446964  T

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Target: scaffold1408 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 2 - 93
Alignment:
Q  133 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttg 224  Q
    |||| |||||||||||||||||||||||||||| |||| || |||  ||| ||| | ||||| ||||||||||||||||||||||| |||||    
T  2 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttg 93  T

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Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 247 - 199
Alignment:
Q  238 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 286  Q
    |||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  247 gaccaaatcaagtcacctatggctagtctactttccccgagagtactat 199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 31499694 - 31499608
Alignment:
Q  138 tggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttg 224  Q
    |||||||| |||||||||||||||||||  ||||| ||| ||||| |||  ||||   |||||||||||||||||||| || |||||    
T  31499694 tggttgtgcctcatcttcaattgccaaagacttgcgctttccagctaaggtatttctgtgattcatcattgttaagttcaactcttg 31499608  T

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