View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_83 (Length: 359)

Name: NF11324A_low_83
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_83
NF11324A_low_83
[»] chr8 (3 HSPs)
chr8 (23-347)||(16686336-16686666)
chr8 (34-100)||(20863923-20863989)
chr8 (27-86)||(1674226-1674285)
[»] chr6 (29 HSPs)
chr6 (23-162)||(4570896-4571035)
chr6 (27-162)||(4606964-4607099)
chr6 (23-100)||(4557111-4557188)
chr6 (23-170)||(4585550-4585699)
chr6 (23-97)||(4560495-4560569)
chr6 (23-86)||(4480693-4480756)
chr6 (25-89)||(4563708-4563772)
chr6 (26-83)||(3171744-3171801)
chr6 (23-86)||(4492955-4493018)
chr6 (23-86)||(4505857-4505920)
chr6 (23-89)||(4574305-4574371)
chr6 (23-100)||(4579418-4579495)
chr6 (26-80)||(4504469-4504523)
chr6 (197-347)||(4584925-4585084)
chr6 (30-91)||(4598166-4598227)
chr6 (23-83)||(4267235-4267295)
chr6 (27-83)||(4299813-4299869)
chr6 (23-82)||(4392095-4392154)
chr6 (27-86)||(4516321-4516380)
chr6 (23-90)||(4592227-4592294)
chr6 (27-86)||(4601789-4601848)
chr6 (27-86)||(4617022-4617081)
chr6 (35-86)||(4515202-4515253)
chr6 (197-240)||(4570452-4570495)
chr6 (24-83)||(4622145-4622204)
chr6 (27-80)||(4490428-4490481)
chr6 (30-91)||(4613794-4613855)
chr6 (188-236)||(4556557-4556605)
chr6 (23-63)||(4568076-4568116)
[»] chr5 (2 HSPs)
chr5 (27-86)||(28000172-28000231)
chr5 (25-83)||(24103002-24103060)
[»] scaffold0477 (1 HSPs)
scaffold0477 (25-83)||(4757-4815)
[»] chr7 (1 HSPs)
chr7 (27-80)||(3086426-3086479)
[»] scaffold0288 (1 HSPs)
scaffold0288 (27-83)||(3792-3848)
[»] chr2 (1 HSPs)
chr2 (251-311)||(6736451-6736511)
[»] chr3 (1 HSPs)
chr3 (27-86)||(1281114-1281173)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 23 - 347
Target Start/End: Original strand, 16686336 - 16686666
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |    
T  16686336 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgcagtagt 16686435  T
Q  123 atattgacccattgatcttctccaattgaattcaagggatatgctattttagtgttttcactgttcgacacacattgatatttgacacctaaatgacccc 222  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||| || |||||||||||||||||||||||    
T  16686436 atattgatccattgatcttctccaattgaattcaagggatatgctattgtagtattttcagtgtccgacacacgttaatatttgacacctaaatgacccc 16686535  T
Q  223 gacatatttagttacatttattatatttttctcaaattattgcaggtgtcgacatgtcagtg------tcattgtcgtgtctagtgtccatgtttatgtc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||| ||||    
T  16686536 gacatatttagttacatttattatatttttctcaaattattgcaggtgtcgacatgtcagtgtcagtctcattgtcgtgtctagtgttcatgtttgtgtc 16686635  T
Q  317 aatggaccatgaatgaaactaatatgatatt 347  Q
    | |||||||||||||||||||||||||||||    
T  16686636 agtggaccatgaatgaaactaatatgatatt 16686666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 20863923 - 20863989
Alignment:
Q  34 gttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 100  Q
    ||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||    
T  20863923 gttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgac 20863989  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 1674285 - 1674226
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||    
T  1674285 ggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 4571035 - 4570896
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||       |||||||| ||||||    
T  4571035 acctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacctaagtgacgtttttaatgcaatgtagtatt 4570936  T
Q  123 atattgacccattgatcttctccaattgaattcaagggat 162  Q
    ||||||| ||||||||||||| | |||||||| |||||||    
T  4570935 atattgatccattgatcttctgctattgaatttaagggat 4570896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 4606964 - 4607099
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtattatat 126  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||       |||||||| | |||||| |    
T  4606964 ggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgtattattatgt 4607063  T
Q  127 tgacccattgatcttctccaattgaattcaagggat 162  Q
    ||| ||||||||||| ||| |||||||| |||||||    
T  4607064 tgatccattgatcttttcctattgaatttaagggat 4607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 4557188 - 4557111
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4557188 acctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgac 4557111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 4585699 - 4585550
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacc--taagtgacnnnnnnnatgcaatgcagta 120  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||        |||||||| ||||    
T  4585699 acctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaacctataagtga-attttttatgcaatgtagta 4585601  T
Q  121 ttatattgacccattgatcttctccaattgaattcaagggat-atgctatt 170  Q
    ||||||||| |||||||| |||||| | |||||| ||||||| ||||||||    
T  4585600 ttatattgatccattgatattctcctactgaatttaagggatgatgctatt 4585550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 4560569 - 4560495
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagt 97  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||    
T  4560569 acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagt 4560495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 4480756 - 4480693
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  4480756 acctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 4563772 - 4563708
Alignment:
Q  25 ctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaa 89  Q
    |||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  4563772 ctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatcaa 4563708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 3171801 - 3171744
Alignment:
Q  26 tggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  3171801 tggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaa 3171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 4493018 - 4492955
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||    
T  4493018 acctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 4505920 - 4505857
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    ||||||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||||||||    
T  4505920 acctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 4574371 - 4574305
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaa 89  Q
    |||||| |||||||||||||  |||||||| |||||||||| |||||| ||||||||||||||||||    
T  4574371 acctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaa 4574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 4579495 - 4579418
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 100  Q
    |||||| || |||||||||||||||||||| |||||||||| |||||| || || |||||||||| ||| ||||||||    
T  4579495 acctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagtgac 4579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 4504469 - 4504523
Alignment:
Q  26 tggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaa 80  Q
    ||||||||||||||||||||||||||| |||||||||| ||| || |||||||||    
T  4504469 tggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 347
Target Start/End: Complemental strand, 4585084 - 4584925
Alignment:
Q  197 ttgatatttgacacctaaatgaccccgacatatttagttacatttattatatttttctcaaattattgcaggtgtcgacatgtcagtgtcattgtcg--- 293  Q
    ||||||||||||||||||| ||| || ||| |||||  |||||||||| || ||||||||||||||||||||  || | || ||| ||||| |||||       
T  4585084 ttgatatttgacacctaaacgactccaacacatttaaatacatttattcta-ttttctcaaattattgcaggcatcaaaatttcattgtcagtgtcgagt 4584986  T
Q  294 -------tgtctagtgtccatgtttatgtcaatggaccatgaatgaaactaatatgatatt 347  Q
           |||||||||||||||||  ||| | |||| ||||| ||||||||||||||||||    
T  4584985 cgtgtcatgtctagtgtccatgttggtgtgactggaacatgactgaaactaatatgatatt 4584925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 4598227 - 4598166
Alignment:
Q  30 ggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaac 91  Q
    |||||||||||||||||||| || |||||||||| |||||| || |||||||| ||||||||    
T  4598227 ggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaac 4598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 4267235 - 4267295
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    ||||||||||| |||||||||||||||||| ||||| |||| ||||||  |||||||||||    
T  4267235 acctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 4299813 - 4299869
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    ||||||||||| |||||||||||||| ||||| |||| ||||||| |||||||||||    
T  4299813 ggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaa 4299869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 4392095 - 4392154
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaaca 82  Q
    ||||||||||| ||||| |||||||||||| ||| |||||| |||||| |||||||||||    
T  4392095 acctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4516380 - 4516321
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||  |||| |||||||||    
T  4516380 ggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat 4516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 4592294 - 4592227
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaa 90  Q
    |||||| ||||||||||| ||||||||||| ||| |||| | |||||| ||||||||| |||||||||    
T  4592294 acctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 4592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4601848 - 4601789
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||| |||| |||| ||||| |||| |||||| |||||||||||||||    
T  4601848 ggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4617081 - 4617022
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||||||||||| | ||||| |||| ||| || |||||||||||||||    
T  4617081 ggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 4515202 - 4515253
Alignment:
Q  35 ttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    ||||||| |||||||||| |||||||| | |||||| |||||||||||||||    
T  4515202 ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 4570495 - 4570452
Alignment:
Q  197 ttgatatttgacacctaaatgaccccgacatatttagttacatt 240  Q
    ||||||||||||||||||| |||||||| | |||||||||||||    
T  4570495 ttgatatttgacacctaaacgaccccgatacatttagttacatt 4570452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 4622204 - 4622145
Alignment:
Q  24 cctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    |||||||||||||||||||  |||||||| ||||| |||| ||||||  |||||||||||    
T  4622204 cctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 4490428 - 4490481
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaa 80  Q
    |||||| ||||||||||||||||||| |||||||||| ||| ||  ||||||||    
T  4490428 ggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 4613794 - 4613855
Alignment:
Q  30 ggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaac 91  Q
    ||||||||||| ||||||||||| |||||||| |  |||||  |||| ||||||||||||||    
T  4613794 ggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaac 4613855  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 4556605 - 4556557
Alignment:
Q  188 cgacacacattgatatttgacacctaaatgaccccgacatatttagtta 236  Q
    |||||||  ||||||||||| ||||||| |||||||||| |||||||||    
T  4556605 cgacacatgttgatatttgaaacctaaacgaccccgacacatttagtta 4556557  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 4568116 - 4568076
Alignment:
Q  23 acctggtggttgttcatacatgaacttggaaaaagtgatta 63  Q
    |||||||| || |||||||||||||||||| ||||||||||    
T  4568116 acctggtgattcttcatacatgaacttggacaaagtgatta 4568076  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 28000172 - 28000231
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    |||||||||||||||||||||||||| |||||||||| ||| || ||| |||||||||||    
T  28000172 ggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 24103060 - 24103002
Alignment:
Q  25 ctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    ||||||||| |||||||||||||||||| ||||| |||| ||||||  |||||||||||    
T  24103060 ctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 4757 - 4815
Alignment:
Q  25 ctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||  |||||||||||    
T  4757 ctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaa 80  Q
    |||||||||||||||||||||||||| ||||| |||| |||||| |||||||||    
T  3086479 ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 3792 - 3848
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 83  Q
    |||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||||    
T  3792 ggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 6736511 - 6736451
Alignment:
Q  251 ttctcaaattattgcaggtgtcgacatgtcagtgtcattgtcgtgtctagtgtccatgttt 311  Q
    ||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||| |||||    
T  6736511 ttctcaaattattaccggtgtcgacgtgtcagtgtctttgtcatgtctagtgtccgtgttt 6736451  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 1281173 - 1281114
Alignment:
Q  27 ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 86  Q
    ||||||||||||||||||||||| || |||||||||| |||  | |||||||||||||||    
T  1281173 ggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

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