View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_88 (Length: 356)

Name: NF11324A_low_88
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_88
NF11324A_low_88
[»] chr6 (22 HSPs)
chr6 (108-350)||(33305268-33305510)
chr6 (1-112)||(33305149-33305260)
chr6 (110-312)||(33286332-33286534)
chr6 (139-304)||(33263453-33263618)
chr6 (110-232)||(33401407-33401529)
chr6 (139-232)||(31561987-31562080)
chr6 (139-304)||(33388857-33389022)
chr6 (110-198)||(33058350-33058438)
chr6 (110-304)||(33643711-33643905)
chr6 (110-318)||(9167553-9167755)
chr6 (1-64)||(33286259-33286322)
chr6 (1-111)||(9167433-9167543)
chr6 (139-312)||(33272615-33272788)
chr6 (1-104)||(31562119-31562222)
chr6 (19-64)||(33272515-33272560)
chr6 (1-49)||(33359444-33359492)
chr6 (1-83)||(33263329-33263414)
chr6 (110-187)||(33359502-33359579)
chr6 (1-83)||(33058255-33058340)
chr6 (273-350)||(33410919-33410999)
chr6 (20-52)||(33388770-33388802)
chr6 (134-182)||(33410750-33410798)
[»] chr2 (2 HSPs)
chr2 (142-232)||(17440001-17440091)
chr2 (1-83)||(17440133-17440216)
[»] chr4 (7 HSPs)
chr4 (111-232)||(31503304-31503425)
chr4 (166-232)||(31498070-31498136)
chr4 (139-216)||(31478170-31478247)
chr4 (141-198)||(31484023-31484080)
chr4 (139-223)||(31527234-31527318)
chr4 (139-198)||(31149175-31149234)
chr4 (141-198)||(31158051-31158108)
[»] scaffold1408 (1 HSPs)
scaffold1408 (142-230)||(1447-1535)
[»] scaffold0428 (1 HSPs)
scaffold0428 (142-230)||(7193-7281)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 108 - 350
Target Start/End: Original strand, 33305268 - 33305510
Alignment:
Q  108 tgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305268 tgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaa 33305367  T
Q  208 tcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305368 tcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgt 33305467  T
Q  308 gttcagcgttcatatctatctcttcattcaaaactatggcttc 350  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33305468 gttcagcgttcatatctatctcttcattcaaaactatggcttc 33305510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33305260 - 33305149
Alignment:
Q  1 aggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtacttttgtttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33305260 aggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttgtttg 33305161  T
Q  101 ttttacatgtcc 112  Q
    ||||||||||||    
T  33305160 ttttacatgtcc 33305149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 33286332 - 33286534
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatc 209  Q
    |||||||||||| ||| ||||| || |  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |     
T  33286332 tccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactg 33286431  T
Q  210 aacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgt 309  Q
    ||||||| ||||||||||||||| |||| || | ||||| |||||   | ||||  || ||| |||||| |||||||||||| |||||||||||| ||||    
T  33286432 aacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttgacaagtgt 33286531  T
Q  310 tca 312  Q
    |||    
T  33286532 tca 33286534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 33263453 - 33263618
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactcc 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||| ||||||||| | ||||||||||||| ||  |    
T  33263453 aagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaac 33263552  T
Q  239 atggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca 304  Q
     ||| |||||||||||  ||   |||||| ||| |||||| |||||||||||| ||||||||||||    
T  33263553 ttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgaca 33263618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 33401407 - 33401529
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatc 209  Q
    |||||||||||| ||| ||||| | |   ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  33401407 tccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggatattcatgccaatc 33401506  T
Q  210 aacatattttaatttgtttgaaa 232  Q
    ||||||| |||||| ||||||||    
T  33401507 aacatatcttaattcgtttgaaa 33401529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 31562080 - 31561987
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 232  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| |||||||||| ||||    
T  31562080 aagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaagccactcaacatatcttaatttgttcgaaa 31561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 33388857 - 33389022
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactcc 238  Q
    |||||||| |||||||| ||| ||||||||||| |||||||||||||||| |||||||| | || ||| ||||||||| ||||| ||||||||| ||||     
T  33388857 aagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcg 33388956  T
Q  239 atggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca 304  Q
    |||| || | || |||   |  |||  |||||| |||||| |||||||||||| ||||||||||||    
T  33388957 atgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgaca 33389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 33058350 - 33058438
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 198  Q
    |||||||||||| ||| |||||   | | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33058350 tccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 33643905 - 33643711
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatc 209  Q
    |||||||||||  ||| |||||  |||| |||| |||||||||||||| |||||| |||||||||||||||||| || | ||||||||   |||||| ||    
T  33643905 tccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtc 33643806  T
Q  210 aacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca 304  Q
    ||||||| ||||||  ||||||| ||  | ||| ||| || ||||   || |||| |||| | ||| || |||||||||||| ||||||||||||    
T  33643805 aacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcatttttgaca 33643711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 318
Target Start/End: Original strand, 9167553 - 9167755
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatc 209  Q
    |||||||||||| ||| ||||| |  || ||||||| || |||||||||||||| ||||||| | |||||||||||||| |||||||||  || ||| ||    
T  9167553 tccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactc 9167652  T
Q  210 aacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgt 309  Q
    || |||| |||||| ||| |||| ||| |||||      | ||||   || |||||| |||| |||||| ||||||||| || |||||||||||| ||||    
T  9167653 aagatatcttaattcgttcgaaagactacatgg------taagatattccaaccgtatttgatgatgagcaatctaagactactcatttttgacaagtgt 9167746  T
Q  310 tcagcgttc 318  Q
    ||| |||||    
T  9167747 tcaacgttc 9167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33286322 - 33286259
Alignment:
Q  1 aggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaatt 64  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  33286322 aggtactataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaatt 33286259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9167543 - 9167433
Alignment:
Q  1 aggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtacttttgtttg 100  Q
    |||||||||||| |||||||||||||  |||||| ||||||||||||||||| | ||||||||| ||| | | |||||||||| | | || ||||||| |    
T  9167543 aggtactataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttacaatcaaagtaatggctctatttttgttgg 9167444  T
Q  101 ttttacatgtc 111  Q
    |||| ||||||    
T  9167443 tttttcatgtc 9167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 312
Target Start/End: Original strand, 33272615 - 33272788
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactcc 238  Q
    ||||||||||||| ||| ||||||||||||||| ||| ||| | | |||| ||||||||| ||| ||| ||||||||| |||||   |||||||  |||     
T  33272615 aagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaaggctcg 33272714  T
Q  239 atggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgttca 312  Q
    || |||| |||| |||   || |||| ||||||  ||||| |||||||||||| ||||||||| || |||||||    
T  33272715 atagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttgccaagtgttca 33272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31562119 - 31562222
Alignment:
Q  1 aggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtacttttgtttg 100  Q
    ||||||| |||||| ||||||||||| |  ||||||||||| |||||||||| | |||||||||||||  || |||||||||| | | || |||||||||    
T  31562119 aggtactgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatcttttaatcaaagtaatggctctatttttgtttg 31562218  T
Q  101 tttt 104  Q
    ||||    
T  31562219 tttt 31562222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33272560 - 33272515
Alignment:
Q  19 tattattaatgtttatcttagaaatataaacaaaattgaaacaatt 64  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  33272560 tattattaatgtttatcttagaaatataaacaaatttgaaacaatt 33272515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33359492 - 33359444
Alignment:
Q  1 aggtactataaattctcttattattaatgtttatcttagaaatataaac 49  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  33359492 aggtaatataaattctcttattattaatgtttattttagaaatataaac 33359444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33263414 - 33263329
Alignment:
Q  1 aggtactataaattctcttattattaatgt---ttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaat 83  Q
    |||||||||||||||||||||||||||| |   | ||||||||||||||| |||| | ||||||||| ||| ||| ||||||||||    
T  33263414 aggtactataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaagtaat 33263329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 33359502 - 33359579
Alignment:
Q  110 tccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact 187  Q
    |||||||||||| |||  ||||  |||| ||||||||||||||||||||||||| || |||| ||| |||||||||||    
T  33359502 tccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatact 33359579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33058340 - 33058255
Alignment:
Q  1 aggtactataaattctcttattattaatgttt---atcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaat 83  Q
    |||||||||||||||| ||||||||||| |||   |||||||||||||||||||| |  |||||||| ||| | | ||||||||||    
T  33058340 aggtactataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaat 33058255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 33410919 - 33410999
Alignment:
Q  273 gatgaggaatctaagattattcatttttgacacgtgttcagcgttcatatctatc---tcttcattcaaaactatggcttc 350  Q
    |||||| |||||||||||| |||||||||| | ||||||| |||||||||| |||   || |||||||||| |||||||||    
T  33410919 gatgagcaatctaagattactcatttttgaaaagtgttcaacgttcatatcaatcccatcatcattcaaaaatatggcttc 33410999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 33388802 - 33388770
Alignment:
Q  20 attattaatgtttatcttagaaatataaacaaa 52  Q
    |||||||||||||||||||||||||||||||||    
T  33388802 attattaatgtttatcttagaaatataaacaaa 33388770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 33410750 - 33410798
Alignment:
Q  134 tctttaagatcaattctacaagttcattggggtgaaaatttgatggcaa 182  Q
    |||| ||||||||||| ||||||||||| ||||||||| || |||||||    
T  33410750 tcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaa 33410798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 17440091 - 17440001
Alignment:
Q  142 atcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 232  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||| | |||| ||||||||| |||||||||| ||||    
T  17440091 atcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaa 17440001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17440133 - 17440216
Alignment:
Q  1 aggtactataaattctcttatta-ttaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaat 83  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||| ||| ||| |||| |||||    
T  17440133 aggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaat 17440216  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 31503425 - 31503304
Alignment:
Q  111 ccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatca 210  Q
    ||||| |||||| ||  |||| ||||| |||||||| || ||||||| ||| || |||||| |||| ||||||||||| ||||||||||||  ||| |||    
T  31503425 ccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggatattcactccattca 31503326  T
Q  211 acatattttaatttgtttgaaa 232  Q
    |||||| |||||| ||| ||||    
T  31503325 acatatcttaattcgttagaaa 31503304  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 31498136 - 31498070
Alignment:
Q  166 tgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 232  Q
    |||||||||||||| |||||| | ||||||||||||||||| |||| |||| |||||||||| ||||    
T  31498136 tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaa 31498070  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 31478247 - 31478170
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatat 216  Q
    ||||||||||| ||||||| ||| | || |||| | |||||||||||||| ||||||||||||  ||| |||||||||    
T  31478247 aagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatat 31478170  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 31484080 - 31484023
Alignment:
Q  141 gatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 198  Q
    ||||||||| ||||||| ||||||  |||||||||||||||||||| | |||||||||    
T  31484080 gatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatat 31484023  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 31527234 - 31527318
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatt 223  Q
    |||||||| || |||||||  | ||| |||||| |||||||||||||| | |||||||||||  |||| ||||||||| ||||||    
T  31527234 aagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt 31527318  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 31149175 - 31149234
Alignment:
Q  139 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 198  Q
    ||||||||||| ||||||| ||| ||  ||||| |||||||||||||||| |||||||||    
T  31149175 aagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatat 31149234  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 31158051 - 31158108
Alignment:
Q  141 gatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 198  Q
    ||||||||| ||||||| |||||| ||||||  || |||||||||||| |||||||||    
T  31158051 gatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggatat 31158108  T

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Target: scaffold1408 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 1447 - 1535
Alignment:
Q  142 atcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttga 230  Q
    ||||||||||||||||||   ||||||||| ||||||||| |||||| ||||||||| ||  ||| | |||||||  ||||||||||||    
T  1447 atcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttga 1535  T

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Target: scaffold0428 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 7193 - 7281
Alignment:
Q  142 atcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttga 230  Q
    ||||||||||||||||||   ||||||||| ||||||||| |||||| ||||||||| ||  ||| | |||||||  ||||||||||||    
T  7193 atcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttga 7281  T

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