View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_9 (Length: 491)
Name: NF11324A_low_9
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Original strand, 6910858 - 6911341
Alignment:
| Q |
5 |
agtatgctaagatgaaattaggcagagatggagacataagtaaagacttatcaaaaaacggttttacaaaagaatcaaacttatgtaaacaatttatact |
104 |
Q |
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| T |
6910858 |
agtatgctaagatgaaattaggtagagatggagacataagtaaagacttatcaaaaaacggttttatataagaatcaaacttatgtaaacaatttatact |
6910957 |
T |
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| Q |
105 |
tatgggagttcattcacaacttgagctcatatgtttggttttataataattcggagtttgatcaaatgagtttttctttaataaataaaagtctattttt |
204 |
Q |
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| T |
6910958 |
tgtcggagttcattcacaacttgagctcatatgtttggttttataataatttggagtttgatcaaatgagtttttctttaataaataaaagtctattttt |
6911057 |
T |
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| Q |
205 |
cctcaaattgttataattgtaaatgttatttaagtctcaaagcctctttaatataaattgaggtgtcatctcttcaccaa-nnnnnnnnnattttaaaca |
303 |
Q |
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| T |
6911058 |
cctcaaattgttgtaattgtaaatgttatttaagtctcaaagtctctttaatataaattgaggcgtcatctcttcaccaatttttttttttttttaaaca |
6911157 |
T |
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| Q |
304 |
aaaagtctatataaattaggtctcacatgcttaagacatgtcttaatgtatattactcatcaacctcttgaccctaaacatgagagttgaattcggtcgt |
403 |
Q |
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| T |
6911158 |
aaaagtctatataaattaggtttcacatgcttaagacatgtcttaatgtatattactcgtcaa---cttgaccctaaacatgagag-tgaattcggtcgt |
6911253 |
T |
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| Q |
404 |
tactatgcatgaaccaatttgttacgaactcaactaacttagttataatctcttacgaactcaatgaactcaaaatttgttatgtttt |
491 |
Q |
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| T |
6911254 |
tacgatgcatgaaccaatttgttacgaactcaactaacttagttataatctcgtacgaactaaatgaactcaaaatttgttatgtttt |
6911341 |
T |
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