View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_91 (Length: 352)
Name: NF11324A_low_91
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 7094172 - 7094027
Alignment:
| Q |
1 |
caccaagatcttgtattcttttacaataattcaattttaggtaaaataaaagatatagtactccaagctattaaattaatctaacaatcaagatttaatg |
100 |
Q |
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| T |
7094172 |
caccaagattttgtattcttttacaataattcaattttaggtaaaataaa-gatatagtactccaacctattaaattaatctaacaatcaagatttaatg |
7094074 |
T |
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| Q |
101 |
agtaatcaatagatgatccaaacacataagttgccttgcctcaagat |
147 |
Q |
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| T |
7094073 |
agtaatccgaagatgatccaaacacataagttgccttgcctcaagat |
7094027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 7093987 - 7093910
Alignment:
| Q |
187 |
ctagaaggccattttgtgtgatttgttgtggaggcttagagacggctcatcatttgtttctctcatgtcattgtttcg |
264 |
Q |
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| T |
7093987 |
ctagaaggccattttgtgtgatttgttgtggaggcttagagacggctcatcatttgtttctctcatgtcattgtttcg |
7093910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 25252436 - 25252499
Alignment:
| Q |
201 |
tgtgtgatttgttgtggaggcttagagacggctcatcatttgtttctctcatgtcattgtttcg |
264 |
Q |
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| T |
25252436 |
tgtgtgactggttgcggaggcttagagacggctcaacattggtttctatcatgtccttgtttcg |
25252499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 23811011 - 23810964
Alignment:
| Q |
216 |
ggaggcttagagacggctcatcatttgtttctctcatgtcattgtttc |
263 |
Q |
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| T |
23811011 |
ggaggcttagagacggctcaccatttgtttctctcctgtccttgtttc |
23810964 |
T |
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