View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_95 (Length: 350)
Name: NF11324A_low_95
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 8438900 - 8439223
Alignment:
| Q |
9 |
gatatgaatgtgatgatcggacataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttca |
108 |
Q |
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| T |
8438900 |
gatatgaatgtgatgatcagacataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttca |
8438998 |
T |
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| Q |
109 |
agccaatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgatttt |
208 |
Q |
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| T |
8438999 |
agccaatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgatttt |
8439098 |
T |
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| Q |
209 |
atcactaataatagaaaaggaaaataatgatattgcattgatcaaattaaataccttcctcatagaagacccggacctttggttgcttcatgagctcatg |
308 |
Q |
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| T |
8439099 |
atcactaataatagaaaaggaaaataatgatattgcattgatc-----aaatacctttctcatagaagacccggacctttggttgcttcatgagctca-- |
8439191 |
T |
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| Q |
309 |
acattgacatggtgtttgattgcaaaccgatgaagt |
344 |
Q |
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| T |
8439192 |
----tgacatggtgtttgattgcaaaccgatgaagt |
8439223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
173 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
255 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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