View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_96 (Length: 350)
Name: NF11324A_low_96
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_96 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 34880931 - 34880602
Alignment:
| Q |
15 |
atggacatcaaccggggatgctgatcatgttatgattgttggatcctattttcattatgcaggagggtttgaacctcctcaggtaattccc--------- |
105 |
Q |
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| T |
34880931 |
atggacatcaaccggggatgccgatcatgttatgattgttggatcctattttcattatgcaggagggtttgaacctcctcaggcaattccctcactttta |
34880832 |
T |
|
| Q |
106 |
------gttttgttaagacaagcttcaagtggcatgaatctttaaactcctcgttctaaattttaatgacctctctccctatttacatattttactgctt |
199 |
Q |
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| T |
34880831 |
tttcccgttttgttaggacaagattcaagtggcatgaatctttaaactcctcgttctaaattttaatgacctctctccctatttacatattttactgctt |
34880732 |
T |
|
| Q |
200 |
agttctccctgcacacacaccacctttattatatctgaatcacaactctagcaccaacaaaactaaccatttgtgatacgttcatgttgttgtaatactt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
34880731 |
agttctccctgcacacacaccacctttattatatctgaatcacaactctagcaccaacaaaactaaccatttgtgatacattcatgtcgttgtaatactt |
34880632 |
T |
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| Q |
300 |
gaatcaataactgatcatggagggaaactt |
329 |
Q |
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||||| ||| |||||||||||||||||||| |
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| T |
34880631 |
gaatcgatagctgatcatggagggaaactt |
34880602 |
T |
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