View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_97 (Length: 347)
Name: NF11324A_low_97
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_97 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 6956473 - 6956815
Alignment:
| Q |
19 |
attatccactaatagtctcattctttcagtttcatttaacttcaaatcttcaagcaacattttaatttaagtccttgacatgctgcaaatgaggttgcta |
118 |
Q |
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| T |
6956473 |
attatccactaatagtctcattctttcagtttcatttaacttcaaatcttcaagcaacattttaatttaagtccttgacatgctgcaaatgaggttgcta |
6956572 |
T |
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| Q |
119 |
ca--------------cacgaggataatgcaactattccttgtttctttgagcactatgagattgaagcttcactaaacatgaataattacccaaatgta |
204 |
Q |
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| T |
6956573 |
catactcaacttaacacacgaggataatgcaactattccttgtttctttgagcactatgagattgaagcttcactaaacgtgaataattacccaaatgta |
6956672 |
T |
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| Q |
205 |
cttttttcttcatgaatttgcttacttatcccacaaggaatgtaaaattaggtttgtattgcttaagtatctcagtgagcctataattttcttatacaat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956673 |
cttttttcttcatgaatttgcttacttatcccacaaggaatgtcaaattaggtttgtattgcttaagtatctcagtgagcctataattttcttatacaat |
6956772 |
T |
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| Q |
305 |
gtagagtcaactagattctcatcaacatctttgccgagtttga |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956773 |
gtagagtcaactagattctcatcaacatctttgccgagtttga |
6956815 |
T |
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