View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324_low_1 (Length: 491)
Name: NF11324_low_1
Description: NF11324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 38567282 - 38566802
Alignment:
| Q |
1 |
cggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaataga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567282 |
cggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaataga |
38567183 |
T |
|
| Q |
101 |
gttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567182 |
gttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggtt |
38567083 |
T |
|
| Q |
201 |
ggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567082 |
ggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
38566983 |
T |
|
| Q |
301 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaaga |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38566982 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaaga |
38566883 |
T |
|
| Q |
401 |
tggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
481 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38566882 |
tggagcaacgattgaagagataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccccaggttct |
38566802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 38526157 - 38525677
Alignment:
| Q |
1 |
cggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38526157 |
cggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgagataga |
38526058 |
T |
|
| Q |
101 |
gttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggtt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | ||||||||| |
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| T |
38526057 |
gttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcattggtt |
38525958 |
T |
|
| Q |
201 |
ggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaag |
300 |
Q |
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||||||||||||||||||||||| ||| |||| | ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
38525957 |
ggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaacatgaaag |
38525858 |
T |
|
| Q |
301 |
aatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaaga |
400 |
Q |
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|| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |
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| T |
38525857 |
aacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatatggtaaaga |
38525758 |
T |
|
| Q |
401 |
tggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
481 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
38525757 |
tggagcaacaattgaagaaataagatctgcatccgaacttgcaaacgccgccaaattcattgataaacttccacaggttct |
38525677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 478
Target Start/End: Original strand, 51199472 - 51199755
Alignment:
| Q |
195 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaaca |
294 |
Q |
| |
|
||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| || || || | ||| |
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| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttctcattgacggtgtcaacc |
51199571 |
T |
|
| Q |
295 |
tgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacgg |
394 |
Q |
| |
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| ||||||||||| | | ||||||||| |||||| || || || |||||||| || || | ||| | | ||||||||| || |||||| |||| || |
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| T |
51199572 |
tcaaagaatttcaactgaaatggatcagacagaaaataggcctagtcagccaggaacctgttctctttacttgcagcattaaagagaacattgcatatgg |
51199671 |
T |
|
| Q |
395 |
taaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggt |
478 |
Q |
| |
|
|| ||||| || || ||||||||| ||| ||||| | || ||||| || ||||||||||| || |||||||| || ||||| |
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|
| T |
51199672 |
caaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaatttatagataaacttcctcaggt |
51199755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
120 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
218 |
Q |
| |
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|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
|
| Q |
219 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
260 |
Q |
| |
|
|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
120 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
218 |
Q |
| |
|
|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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|
| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
|
| Q |
219 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
260 |
Q |
| |
|
|| || ||| || | | |||| |||||||||||||||||||| |
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|
| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
204 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
264 |
Q |
| |
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|||||||| |||||||| || ||| | || |||||| |||||||||| ||||||||||||| |
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|
| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
195 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
277 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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|
| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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