View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324_low_3 (Length: 361)
Name: NF11324_low_3
Description: NF11324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 43453179 - 43453522
Alignment:
| Q |
1 |
gtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaa |
100 |
Q |
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| T |
43453179 |
gtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaa |
43453278 |
T |
|
| Q |
101 |
gatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgcta |
200 |
Q |
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| T |
43453279 |
gatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgcta |
43453378 |
T |
|
| Q |
201 |
aactcgcaagaacgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggaga |
300 |
Q |
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| T |
43453379 |
aactcgcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggaga |
43453478 |
T |
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| Q |
301 |
tgaagattccactcttatggcaattgattttggactgtccattt |
344 |
Q |
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| T |
43453479 |
tgaagattccactcttatggcaattgattttggactgtccattt |
43453522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 43462629 - 43462956
Alignment:
| Q |
12 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgt |
111 |
Q |
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| T |
43462629 |
atgatgtagaggatgtgaggagggaaattaagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgt |
43462728 |
T |
|
| Q |
112 |
tgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaaga |
211 |
Q |
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| T |
43462729 |
tgtttatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaaga |
43462828 |
T |
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| Q |
212 |
acgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattcca |
311 |
Q |
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| T |
43462829 |
actatcgttagtgttgttgagacttgtcactcacgtggagttatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaa |
43462928 |
T |
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| Q |
312 |
ctcttatggcaattgattttggactgtc |
339 |
Q |
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| T |
43462929 |
ctcttaaagcaattgattttggattgtc |
43462956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 24421081 - 24420812
Alignment:
| Q |
23 |
gatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattg |
122 |
Q |
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||||||||||| |||||| | || ||||||||||| | ||| | | | |||||||| || || || | ||||| ||| ||| | || | |||| || ||| |
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| T |
24421081 |
gatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgaggatgctgttgctgttcatgttg |
24420982 |
T |
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| Q |
123 |
taatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaa |
222 |
Q |
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| T |
24420981 |
ttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggactattgttgg |
24420882 |
T |
|
| Q |
223 |
tgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgtt |
292 |
Q |
| |
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| T |
24420881 |
tgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttgtt |
24420812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 8403596 - 8403628
Alignment:
| Q |
251 |
gttatgcatcgtgatcttaagcctgaaaatttc |
283 |
Q |
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| T |
8403596 |
gttatgcatcgtgatcttaagcctgagaatttc |
8403628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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