View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324_low_5 (Length: 249)
Name: NF11324_low_5
Description: NF11324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 43260850 - 43261073
Alignment:
| Q |
11 |
cagagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaa |
110 |
Q |
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| T |
43260850 |
cagagacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaa |
43260949 |
T |
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| Q |
111 |
aggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacac |
210 |
Q |
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| T |
43260950 |
aggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacac |
43261049 |
T |
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| Q |
211 |
tagagcttgtgtagccatgttttt |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
43261050 |
tagagcttgtgtagccatgttttt |
43261073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 43257263 - 43257477
Alignment:
| Q |
13 |
gagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaag |
112 |
Q |
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| T |
43257263 |
gagacactattattaat-aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaag |
43257355 |
T |
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| Q |
113 |
gaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacacta |
212 |
Q |
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| T |
43257356 |
gatccttttctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaata |
43257455 |
T |
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| Q |
213 |
gagcttgtgtagccatgttttt |
234 |
Q |
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| T |
43257456 |
gaacttgtgtagccatgttttt |
43257477 |
T |
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