View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11325_high_1 (Length: 494)
Name: NF11325_high_1
Description: NF11325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11325_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Complemental strand, 34676365 - 34675950
Alignment:
| Q |
14 |
agggaaagtaagtaattgtaaaactgtggtccacgaatatatataagaggtagcaaaattaaagtgnnnnnnnnnnnncaagataaggaatatatatagc |
113 |
Q |
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| T |
34676365 |
agggaaagtaag-aattgtaaaactgtggtccacgaatatatataag--gtagcaaaattaaagtgaaaaataaaaaacaagataaggaatatatatagc |
34676269 |
T |
|
| Q |
114 |
tagggtaagtaagatatataggaagactaacccgtagagttaggctttagaatcaagaaattaattattaaacgatatatatatgcttcatttcattcat |
213 |
Q |
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| T |
34676268 |
tagggtaagtaagatatatgggaagactaacccgtagagttaggctttagaatcaagaaattaattattaaacgatatatatatgcttcatttcattcat |
34676169 |
T |
|
| Q |
214 |
ttattcttgataataataaataaacaatgacagagaatgtcaactcaaatgcacatgcctatagagtttgcattttcattgatcaatacacaaacaagac |
313 |
Q |
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| T |
34676168 |
ttatttttgataataataaataaacaatgacagagaatgtcaactcaaatgcacatgcctatagagtttgcattttcattgatcaatacacaaacaagac |
34676069 |
T |
|
| Q |
314 |
tagtagtgttgatatgtagccatacattaatcatacttccatgcatgccctatataccaacttattcactagctaggttttaatttaaacaacacttcct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676068 |
tagtagtgttgatatgtagccatacattaatcatacttccatgcatgccctatataccaacttattcactagctaggttttaatttaaacaacacttcct |
34675969 |
T |
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| Q |
414 |
catcaacaactagacaatg |
432 |
Q |
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||||||||||||||||||| |
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| T |
34675968 |
catcaacaactagacaatg |
34675950 |
T |
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