View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11325_high_4 (Length: 265)

Name: NF11325_high_4
Description: NF11325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11325_high_4
NF11325_high_4
[»] chr6 (16 HSPs)
chr6 (1-244)||(2982704-2982947)
chr6 (1-231)||(3003772-3004008)
chr6 (131-230)||(2927006-2927105)
chr6 (131-186)||(2934489-2934544)
chr6 (131-185)||(2951833-2951887)
chr6 (131-186)||(2964390-2964445)
chr6 (131-186)||(2973903-2973958)
chr6 (131-186)||(2997530-2997585)
chr6 (1-71)||(2997382-2997452)
chr6 (139-186)||(2659141-2659188)
chr6 (1-107)||(2951917-2952023)
chr6 (1-109)||(2964485-2964593)
chr6 (1-68)||(2658985-2659052)
chr6 (1-107)||(2934577-2934683)
chr6 (1-43)||(2937502-2937544)
chr6 (5-107)||(2927135-2927237)
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-186)||(35361-35415)
[»] chr3 (3 HSPs)
chr3 (1-67)||(49618436-49618502)
chr3 (131-184)||(49618306-49618359)
chr3 (1-33)||(49613494-49613526)
[»] chr7 (1 HSPs)
chr7 (154-186)||(3339059-3339091)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2982947 - 2982704
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaag 100  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||| ||| |||| || |||||||| || | || ||||||||||||||||||||||||    
T  2982947 tcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttattcaattttttaaagtaatggatagtgagttcaag 2982848  T
Q  101 aaaagaaggaacacttttgtatatggaacttgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatatttt 200  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  2982847 aaaagaaggaacacttttgtatatggaacatgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataat 2982748  T
Q  201 ataagattttctaaccaaggtggaaagagaacctcaccataata 244  Q
    |||||| ||| |||||||||| |||||||| || ||||||||||    
T  2982747 ataagactttttaaccaaggttgaaagagagccccaccataata 2982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3003772 - 3004008
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaag 100  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||| |||| ||| || ||||||||| |||    ||| ||||| |||||||||| |||    
T  3003772 tcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaag 3003871  T
Q  101 aaaagaa-ggaacacttttgtatatggaactt--------gaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtaca 191  Q
    ||||||| ||| ||   | |||   ||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  3003872 aaaagaatggatcatagtggta---ggaacattagtcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaa 3003968  T
Q  192 tcatattttataagattttctaaccaaggtggaaagagaa 231  Q
    || | | |||||  ||| ||||||||||||  ||||||||    
T  3003969 tcgtttcttataccattatctaaccaaggtttaaagagaa 3004008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 2927105 - 2927006
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatattttataagattttctaaccaaggtggaaagaga 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||| | | |||||  ||| ||||||||||||  |||||||    
T  2927105 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaagaga 2927006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 2934544 - 2934489
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934544 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 2934489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 2951887 - 2951833
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951887 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaac 2951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 2964445 - 2964390
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2964445 tgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagtaaca 2964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 2973958 - 2973903
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2973958 tgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 2973903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 2997530 - 2997585
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2997530 tgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaaca 2997585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2997382 - 2997452
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaa 71  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||||    
T  2997382 tcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaa 2997452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 2659141 - 2659188
Alignment:
Q  139 tgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2659141 tgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaaca 2659188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2952023 - 2951917
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaag 100  Q
    |||||||||||||||||||||| ||||||||||||| ||| | ||| |||| ||| || ||||||||| |||    ||| ||||| |||||||||| |||    
T  2952023 tcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaag 2951924  T
Q  101 aaaagaa 107  Q
    |||||||    
T  2951923 aaaagaa 2951917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 2964593 - 2964485
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaag 100  Q
    |||||||||||||||||||||| ||||||||||||| ||| | ||| |||| ||| || ||||||||| |||  | ||| ||||   ||||||||| |||    
T  2964593 tcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagtttaag 2964494  T
Q  101 aaaagaagg 109  Q
    |||||||||    
T  2964493 aaaagaagg 2964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2658985 - 2659052
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattg 68  Q
    ||||||||||||||||||||||  |||||||||||| ||||| ||| ||| ||||||| |||||||||    
T  2658985 tcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttattg 2659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2934683 - 2934577
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaag 100  Q
    |||||||||||||||||||||| ||||||||||||| ||| | ||| |||| ||| || ||||||||| |||    ||| ||||| |||||||||  |||    
T  2934683 tcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtctaag 2934584  T
Q  101 aaaagaa 107  Q
    |||||||    
T  2934583 aaaagaa 2934577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2937544 - 2937502
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatc 43  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  2937544 tcctaatcagatcagtgaagtgacttatactaatatcaccatc 2937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 2927237 - 2927135
Alignment:
Q  5 aatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttattgaaatgttgaaagtaatggatagtgagttcaagaaaa 104  Q
    |||||||||||||||||| |||||| |||||| ||| | ||| |||| ||| || ||||||||| |||    ||| ||||| |||||||||| |||||||    
T  2927237 aatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaa 2927138  T
Q  105 gaa 107  Q
    |||    
T  2927137 gaa 2927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 35361 - 35415
Alignment:
Q  132 gaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 186  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35361 gaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 35415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 49618502 - 49618436
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaatatgaccatcatctaaatacaagttcgatttatt 67  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||| |||| ||| || ||||||||    
T  49618502 tcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttatt 49618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 49618359 - 49618306
Alignment:
Q  131 tgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaa 184  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  49618359 tgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaa 49618306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49613526 - 49613494
Alignment:
Q  1 tcctaatcagatcagtgaagtgacttatactaa 33  Q
    |||||||||||||||||||||| ||||||||||    
T  49613526 tcctaatcagatcagtgaagtgccttatactaa 49613494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 3339091 - 3339059
Alignment:
Q  154 taacgaaaaagggaagctgattttcaagtaaca 186  Q
    |||||||||||||||||||||||||||||||||    
T  3339091 taacgaaaaagggaagctgattttcaagtaaca 3339059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University