View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11325_low_3 (Length: 425)
Name: NF11325_low_3
Description: NF11325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11325_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 35279808 - 35280226
Alignment:
| Q |
1 |
tccgagtgtaaagtgttgtgtttgttacgtagttagactacagatccgtttggtgcacatggtggagagatatgatatgataaaacagttctatcatatc |
100 |
Q |
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| T |
35279808 |
tccgagtgtaaaatgttgtgtttgttacgtagttagactacagatccgtttggtgcacatggtggaaagatatgatatgataaaacagttctatcatatc |
35279907 |
T |
|
| Q |
101 |
ttaatttcgcattttgacgcatcaatagnnnnnnntaaat--ttgacttactattaatcttatcacgttgccattttgatattttaacccttaattatag |
198 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
35279908 |
ttaatttcgcattttgacgcatcaataggaagaaaaaaaaaattgacttactattaatctcatcatgttgccattttgatattttaatccttaattatag |
35280007 |
T |
|
| Q |
199 |
ttgggttacagacttgataggaaacgttaaacctatcatgctagctacactctttcgcacgtaactgtcctctcccgtacccttgatctctttttcgatg |
298 |
Q |
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| T |
35280008 |
ttgggttacagacttgataggaaacgttaaacctatcatgctagctacactttttcgcacgtaactgtcctctcccgtacccttgacctctttttcgatg |
35280107 |
T |
|
| Q |
299 |
aacaacctcttcttcaaactccatctctgcaaccggtcttgttgctcccatctccaacccgttctccctctctcatctttgcaacctctttatttaaaaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35280108 |
aacaacctcttcttcaaactccatctctgcaaccggtcttgttgctcccatctccaacccattctccctctctcatctttgcaacctctttatttaaaaa |
35280207 |
T |
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| Q |
399 |
attatgtttcttctctctc |
417 |
Q |
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|||||||||||| |||||| |
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| T |
35280208 |
attatgtttcttttctctc |
35280226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 19181586 - 19181546
Alignment:
| Q |
45 |
tccgtttggtgcacatggtggagagatatgatatgataaaa |
85 |
Q |
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||||||||||||||||| | |||||| |||||||||||||| |
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| T |
19181586 |
tccgtttggtgcacatgatagagagacatgatatgataaaa |
19181546 |
T |
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