View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11325_low_6 (Length: 327)
Name: NF11325_low_6
Description: NF11325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11325_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 3305260 - 3304958
Alignment:
| Q |
16 |
aagaaaggaactaacaaatggacatagctctcttctctacatcatctctcttcgccgaagaagatgatgacgatgacattcataccaagggtactannnn |
115 |
Q |
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| T |
3305260 |
aagaaaggaactaacaaatggacatagctctcttctccacatcatctctcttcgccgaagaagatgatgacgatgacattcataccaagggtactactct |
3305161 |
T |
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| Q |
116 |
nnnnnnnnnn--------gcttgtttcttctttgattcctatgttgacaaattatgtttctgaatgcagatgaggaaaacgctgagactcatgaaaccta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3305160 |
ctctctctctctctctctgcttgtttcttctttgattcctatgttgacaaattatgtttctgaatgcagatgaggaaaacgctgagactcatgaaactta |
3305061 |
T |
|
| Q |
208 |
tgttgagaggaagcatcagttccctggaatggtaaactaaagttttcttttttaatattcattcatcatatcgccattatttggggctattcaattcaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3305060 |
tgttgagaggaagcatcagttccctggaatggtaaagtaaagttttcatttttaatattcattcatcatatcgccattatttggggctattcaattcaat |
3304961 |
T |
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| Q |
308 |
act |
310 |
Q |
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||| |
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| T |
3304960 |
act |
3304958 |
T |
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