View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11326_low_1 (Length: 455)
Name: NF11326_low_1
Description: NF11326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11326_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 13885579 - 13885959
Alignment:
| Q |
19 |
ggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatatggagagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
13885579 |
ggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctacgaatatcagaattaatatatggagaac |
13885678 |
T |
|
| Q |
119 |
ttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaacacggttc |
218 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13885679 |
ttggggctgaattgtctgttatgccataaatgctagagagggatgttgtcgatgaataaaagtcagatttatatgtcaagccatcagaaaaacacggttc |
13885778 |
T |
|
| Q |
219 |
taaaagtgaaaaagcaggacttgcacatacgctatgaacctgagtaaattgagaggtgtcatctgagtttttattattctcgttgattttagttacaaca |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885779 |
tgaaagtgaaaaagcaggacttgcacatacgctacgaacctgagtaaattgagaggtgtcatctgagtttttattattctcgttgattttagttacaaca |
13885878 |
T |
|
| Q |
319 |
gcaacttctttcatctttgaaaaactcgaatcatcgataattcgattttttccctcatgaaccctaattcgttcacatctc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13885879 |
gcaacttctttcatctttgaaaaactcgaatcattgataattcgattatttccctcatgaaccctaattggttcacatctc |
13885959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 1220153 - 1220198
Alignment:
| Q |
356 |
taattcgattttttccctcatgaaccctaattcgttcacatctcct |
401 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
1220153 |
taattcgattgtttccgtcatgaaacctaattggttcacatctcct |
1220198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 29092148 - 29091915
Alignment:
| Q |
26 |
tagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatatggagagcttggtgt |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
29092148 |
tagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaatatctggattaatatatggagaacttgggac |
29092049 |
T |
|
| Q |
126 |
tgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaacacggttctaaaagt |
225 |
Q |
| |
|
||||||||| || ||||||| |||||| || ||||| | | ||||||||||| ||||||||||||| ||||| |||||||||||| ||||| ||||| |
|
|
| T |
29092048 |
tgaattgtctgtcatgccatgaatgctggagagggacgacactgatgaataaaattcagatttatatgacaagccgtcagaaaaacaccgttctgaaagt |
29091949 |
T |
|
| Q |
226 |
gaaaaagcaggacttgcacatacgctatgaacct |
259 |
Q |
| |
|
|| |||| |||||||||||| |||||||| |||| |
|
|
| T |
29091948 |
gacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 31913691 - 31913648
Alignment:
| Q |
356 |
taattcgattttttccctcatgaaccctaattcgttcacatctc |
399 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
31913691 |
taattcgattgtttccatcatgaaccctaattggttcacatctc |
31913648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University