View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11326_low_2 (Length: 385)
Name: NF11326_low_2
Description: NF11326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11326_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 41765834 - 41765486
Alignment:
| Q |
19 |
acagagacttcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattg |
118 |
Q |
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| T |
41765834 |
acagagacttcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattg |
41765735 |
T |
|
| Q |
119 |
cttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggta |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41765734 |
cttccaccactcttggacttgcaacctcccacccactaggacaaagacaaaacttgctttttctcaacatagcatagtaagacacaccctttggaaggta |
41765635 |
T |
|
| Q |
219 |
cttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765634 |
cttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgat |
41765535 |
T |
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| Q |
319 |
ctcttagatggtgatggtccaccaagaagatcatcaattatgccggttc |
367 |
Q |
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| T |
41765534 |
ctcttagatggtgatggtccgccaagaagatcatcaattatgccggttc |
41765486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 41757751 - 41757435
Alignment:
| Q |
19 |
acagagacttcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757751 |
acagagacttcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattg |
41757652 |
T |
|
| Q |
119 |
cttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41757651 |
cttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttcttaacatatcatagtaagacacaccctttggaaggta |
41757552 |
T |
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| Q |
219 |
cttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgat |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| |||| |
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| T |
41757551 |
cttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactgat |
41757452 |
T |
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| Q |
319 |
ctcttagatggtgatgg |
335 |
Q |
| |
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| ||||||||||||||| |
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| T |
41757451 |
cgcttagatggtgatgg |
41757435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 26973037 - 26973235
Alignment:
| Q |
28 |
tcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccacca |
127 |
Q |
| |
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||||||||||| || |||||||| || |||||||| |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| || || | |
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| T |
26973037 |
tcaacagaaaaagacttccaatttaagacatcactaaatggaggaacataatgatctgaaataagtacaggaacacagcctgtgtaaattgcctcaacta |
26973136 |
T |
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| Q |
128 |
ctcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaa |
226 |
Q |
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|||||||| || ||||| || ||||||||||| |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
26973137 |
tccttggactagccacctcataaccactaggacagagacagaacttgctctttctcagcatttcatagtaagaaacaccctttggaagatacttttgaa |
26973235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 47725770 - 47725854
Alignment:
| Q |
93 |
cactggaacacaacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctt |
177 |
Q |
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|||||| ||||| |||| || |||||||||||||||||||||||||| || || | |||||||| || | ||| ||||||||| |
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| T |
47725770 |
cactgggacacatcctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgctt |
47725854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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