View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11326_low_4 (Length: 321)

Name: NF11326_low_4
Description: NF11326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11326_low_4
NF11326_low_4
[»] chr6 (27 HSPs)
chr6 (117-310)||(5692733-5692926)
chr6 (140-310)||(5174244-5174414)
chr6 (169-310)||(5275990-5276131)
chr6 (67-239)||(5276130-5276303)
chr6 (195-316)||(5380461-5380582)
chr6 (207-286)||(5340679-5340758)
chr6 (204-311)||(5093035-5093142)
chr6 (213-316)||(5422298-5422401)
chr6 (204-262)||(5149599-5149657)
chr6 (204-311)||(5160395-5160502)
chr6 (204-294)||(5358031-5358121)
chr6 (234-298)||(5107707-5107771)
chr6 (16-53)||(287414-287451)
chr6 (16-53)||(5457412-5457449)
chr6 (16-53)||(9388791-9388828)
chr6 (16-53)||(33487833-33487870)
chr6 (205-289)||(5184754-5184838)
chr6 (213-288)||(5429722-5429797)
chr6 (112-195)||(5429824-5429907)
chr6 (20-55)||(6418135-6418170)
chr6 (16-55)||(12106064-12106103)
chr6 (16-54)||(231105-231143)
chr6 (213-307)||(5366610-5366704)
chr6 (16-54)||(34301832-34301870)
chr6 (16-53)||(4844400-4844437)
chr6 (16-53)||(8743188-8743225)
chr6 (16-53)||(30248647-30248684)
[»] chr4 (23 HSPs)
chr4 (204-295)||(4323731-4323822)
chr4 (204-295)||(4356865-4356956)
chr4 (16-54)||(25708678-25708716)
chr4 (16-53)||(1859144-1859181)
chr4 (16-53)||(6807429-6807466)
chr4 (17-53)||(29427493-29427529)
chr4 (16-51)||(54676549-54676584)
chr4 (209-295)||(4332762-4332848)
chr4 (16-54)||(5743659-5743697)
chr4 (16-54)||(30771527-30771565)
chr4 (16-54)||(34273219-34273257)
chr4 (16-54)||(45921430-45921468)
chr4 (16-54)||(47806859-47806897)
chr4 (16-54)||(52977981-52978019)
chr4 (16-53)||(4035825-4035862)
chr4 (16-53)||(5375557-5375594)
chr4 (16-53)||(9328240-9328277)
chr4 (16-53)||(32032993-32033030)
chr4 (16-53)||(33413518-33413555)
chr4 (16-53)||(44294789-44294826)
chr4 (16-53)||(45742806-45742843)
chr4 (16-56)||(15241477-15241517)
chr4 (17-53)||(26626003-26626039)
[»] chr2 (20 HSPs)
chr2 (16-54)||(39833999-39834037)
chr2 (16-53)||(5664638-5664675)
chr2 (16-53)||(25624733-25624770)
chr2 (16-56)||(8716892-8716932)
chr2 (16-54)||(2438224-2438262)
chr2 (16-54)||(7491843-7491881)
chr2 (16-54)||(27560205-27560243)
chr2 (16-53)||(8990204-8990241)
chr2 (16-53)||(11201683-11201720)
chr2 (20-53)||(11201947-11201980)
chr2 (16-53)||(17408294-17408331)
chr2 (16-53)||(18970729-18970766)
chr2 (16-53)||(20252210-20252247)
chr2 (16-53)||(34062665-34062702)
chr2 (16-53)||(34883848-34883885)
chr2 (16-53)||(36131028-36131065)
chr2 (16-53)||(40607702-40607739)
chr2 (16-53)||(41450516-41450553)
chr2 (16-56)||(8912874-8912914)
chr2 (22-54)||(10757984-10758016)
[»] scaffold0025 (1 HSPs)
scaffold0025 (16-53)||(65637-65674)
[»] chr8 (23 HSPs)
chr8 (16-53)||(11798605-11798642)
chr8 (16-56)||(51095-51135)
chr8 (16-60)||(2944272-2944316)
chr8 (16-55)||(39029176-39029215)
chr8 (16-54)||(1774341-1774379)
chr8 (16-54)||(9035539-9035577)
chr8 (16-54)||(28192175-28192213)
chr8 (16-54)||(44251121-44251159)
chr8 (16-53)||(8251933-8251970)
chr8 (16-53)||(8951428-8951465)
chr8 (16-53)||(13153928-13153965)
chr8 (16-53)||(18754144-18754181)
chr8 (16-53)||(28572046-28572083)
chr8 (16-53)||(28579639-28579676)
chr8 (20-53)||(32475231-32475264)
chr8 (16-53)||(32675757-32675794)
chr8 (16-53)||(34490517-34490554)
chr8 (16-53)||(34568490-34568527)
chr8 (16-53)||(36786467-36786504)
chr8 (16-53)||(40784891-40784928)
chr8 (17-54)||(41014503-41014540)
chr8 (21-53)||(26990567-26990599)
chr8 (16-48)||(44580879-44580911)
[»] chr7 (18 HSPs)
chr7 (16-53)||(44547426-44547463)
chr7 (16-54)||(26255095-26255133)
chr7 (16-54)||(39197717-39197755)
chr7 (16-53)||(7449270-7449307)
chr7 (16-53)||(19920563-19920600)
chr7 (16-53)||(21295151-21295188)
chr7 (16-53)||(29286037-29286074)
chr7 (16-53)||(32814433-32814470)
chr7 (16-53)||(32872375-32872412)
chr7 (16-53)||(33858866-33858903)
chr7 (16-53)||(36698131-36698168)
chr7 (16-53)||(38858298-38858335)
chr7 (16-53)||(39871613-39871650)
chr7 (17-54)||(40300229-40300266)
chr7 (16-53)||(41026096-41026133)
chr7 (16-53)||(41252361-41252398)
chr7 (16-53)||(48521029-48521066)
chr7 (19-47)||(10475965-10475993)
[»] chr5 (14 HSPs)
chr5 (16-53)||(32147294-32147331)
chr5 (16-54)||(1265948-1265986)
chr5 (16-53)||(5527974-5528011)
chr5 (16-53)||(6673228-6673265)
chr5 (17-54)||(7951561-7951598)
chr5 (16-53)||(9828393-9828430)
chr5 (19-56)||(14570893-14570930)
chr5 (16-53)||(14913648-14913685)
chr5 (16-53)||(16127259-16127296)
chr5 (16-53)||(22527692-22527729)
chr5 (16-53)||(26894873-26894910)
chr5 (16-53)||(40004409-40004446)
chr5 (21-53)||(13661124-13661156)
chr5 (17-53)||(34662204-34662240)
[»] chr3 (30 HSPs)
chr3 (16-53)||(23700785-23700822)
chr3 (16-53)||(23719240-23719277)
chr3 (16-53)||(23737696-23737733)
chr3 (16-53)||(43701178-43701215)
chr3 (17-56)||(4024049-4024088)
chr3 (16-55)||(26593765-26593804)
chr3 (19-54)||(45049025-45049060)
chr3 (16-54)||(10220932-10220970)
chr3 (16-54)||(14428609-14428647)
chr3 (16-54)||(21756485-21756523)
chr3 (19-53)||(46049727-46049761)
chr3 (16-54)||(46049986-46050024)
chr3 (16-54)||(49127198-49127236)
chr3 (16-53)||(7181350-7181387)
chr3 (16-53)||(9499497-9499534)
chr3 (16-53)||(12050392-12050429)
chr3 (16-53)||(12683182-12683219)
chr3 (16-53)||(22103929-22103966)
chr3 (16-53)||(25149122-25149159)
chr3 (16-53)||(35868083-35868120)
chr3 (20-53)||(36099228-36099261)
chr3 (16-53)||(37728713-37728750)
chr3 (16-53)||(43868103-43868140)
chr3 (16-53)||(44543782-44543819)
chr3 (16-53)||(45252773-45252810)
chr3 (20-53)||(51283802-51283835)
chr3 (16-53)||(51284062-51284099)
chr3 (16-53)||(53271593-53271630)
chr3 (16-53)||(53361855-53361892)
chr3 (20-56)||(52058982-52059018)
[»] chr1 (23 HSPs)
chr1 (16-53)||(39750381-39750418)
chr1 (19-54)||(36695118-36695153)
chr1 (19-54)||(36711219-36711254)
chr1 (16-54)||(943637-943675)
chr1 (16-54)||(15811232-15811270)
chr1 (16-54)||(30290264-30290302)
chr1 (16-54)||(39363194-39363232)
chr1 (16-54)||(44649628-44649666)
chr1 (16-54)||(49907020-49907058)
chr1 (16-53)||(1039381-1039418)
chr1 (16-53)||(1046287-1046324)
chr1 (16-53)||(4102714-4102751)
chr1 (16-53)||(11741397-11741434)
chr1 (16-53)||(23541979-23542016)
chr1 (16-53)||(36694854-36694891)
chr1 (16-53)||(36710955-36710992)
chr1 (16-53)||(37951949-37951986)
chr1 (16-53)||(39497433-39497470)
chr1 (16-53)||(45039412-45039449)
chr1 (16-53)||(46075867-46075904)
chr1 (16-53)||(50007975-50008012)
chr1 (16-53)||(52431174-52431211)
chr1 (16-52)||(30289862-30289898)
[»] scaffold0604 (1 HSPs)
scaffold0604 (16-53)||(3782-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (16-53)||(12065-12102)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-53)||(51682-51719)
[»] scaffold0012 (1 HSPs)
scaffold0012 (16-53)||(47640-47677)
[»] scaffold0008 (1 HSPs)
scaffold0008 (16-53)||(259122-259159)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 117 - 310
Target Start/End: Original strand, 5692733 - 5692926
Alignment:
Q  117 tacctggaatttagaactacgatgccagcaaggccagcaacctcacggagcacatctctccatttcaaggaagcgtctttcttattcgaaattctgttca 216  Q
    |||||| ||||| ||||||| | ||||||||| |||||||||||||  ||| | |||||||||||||  ||   |||| |||| || ||||||||| |||    
T  5692733 tacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctca 5692832  T
Q  217 agagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactatttgtcctat 310  Q
    |||||||||| || ||||||||||||||||| |||||||| ||||| || || ||||||||||| |||||||| |||| |||||| || |||||    
T  5692833 agagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgccctat 5692926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 140 - 310
Target Start/End: Complemental strand, 5174414 - 5174244
Alignment:
Q  140 gccagcaaggccagcaacctcacggagcacatctctccatttcaaggaagcgtctttcttattcgaaattctgttcaagagactttgaaatgcttttcca 239  Q
    |||||||||  ||||| ||||||| ||  ||||||||||||||| ||| | |  |||||| || ||||||||| ||||||||||||| || |||||||||    
T  5174414 gccagcaagctcagcagcctcacgaagtgcatctctccatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttcca 5174315  T
Q  240 aactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactatttgtcctat 310  Q
    |||||||| |||||||| ||||| || || ||||||||||| |||||||| |||| |||||| || |||||    
T  5174314 aactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggcaacactatctgccctat 5174244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 5276131 - 5275990
Alignment:
Q  169 catctctccatttcaaggaagcgtctttcttattcgaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcgga 268  Q
    |||||||| |||||| ||| | |  |||||| || ||||||||| ||||||||||||| || ||||||||||||||||| |||||||| ||||| || ||    
T  5276131 catctctcaatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctga 5276032  T
Q  269 gggatcaacatcgtagaacacaggcagcactatttgtcctat 310  Q
     ||||||||||| |||||||| |||| |||||| || |||||    
T  5276031 aggatcaacatcatagaacaccggcaacactatctgccctat 5275990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 5276303 - 5276130
Alignment:
Q  67 caattggtttaacatctccaatttagaagcactttaatggttgaattaa-ttacctggaatttagaactacgatgccagcaaggccagcaacctcacgga 165  Q
    |||||||| ||||||||||||| |||||| | | ||| ||||||||||| ||||||| ||||| ||||||| | ||||||||   ||||||||||||| |    
T  5276303 caattggtataacatctccaatatagaagtattgtaacggttgaattaaattacctgaaatttggaactacaaagccagcaatctcagcaacctcacgaa 5276204  T
Q  166 gcacatctctccatttcaaggaagcgtctttcttattcgaaattctgttcaagagactttgaaatgcttttcca 239  Q
    |  ||||||||||||||| ||| | |  |||||| ||  |||||||| ||||||||||||| || |||||||||    
T  5276203 gtgcatctctccatttcagggatgtgcttttcttctttaaaattctgctcaagagactttggaacgcttttcca 5276130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 5380582 - 5380461
Alignment:
Q  195 ttcttattcgaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggca 294  Q
    ||||| ||||||| | || |||||||||||| ||| |||| |||||||||||| |||||||||||||||||  ||||||||||||| |||||||| || |    
T  5380582 ttcttcttcgaaagtttgctcaagagactttcaaaagcttgtccaaactcaccagtttggtgacgtacctccaagggatcaacatcatagaacaccggta 5380483  T
Q  295 gcactatttgtcctatgtttct 316  Q
    ||||||| ||| ||||| ||||    
T  5380482 gcactatctgtgctatggttct 5380461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 5340758 - 5340679
Alignment:
Q  207 attctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaa 286  Q
    ||||||||||| ||| |||||||||||||||||||||| || ||||| |||||||  || ||||||||||||||||||||    
T  5340758 attctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa 5340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 5093142 - 5093035
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactattt 303  Q
    |||||||| || |||||| ||||||||||||| |||||||| ||  | ||||||||||| || |||||||| |||||||||||||| ||||  ||||| |    
T  5093142 gaaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatct 5093043  T
Q  304 gtcctatg 311  Q
    | ||||||    
T  5093042 gccctatg 5093035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 5422401 - 5422298
Alignment:
Q  213 ttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactatttgtcctatgt 312  Q
    ||||| ||| ||||||||||||||||||| |||||||||||  ||||||| ||||| ||||| || ||| ||||||| ||||| || |||||||| |||     
T  5422401 ttcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttgtccaatgg 5422302  T
Q  313 ttct 316  Q
    ||||    
T  5422301 ttct 5422298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 5149599 - 5149657
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtac 262  Q
    |||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  5149599 gaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtac 5149657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 5160395 - 5160502
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactattt 303  Q
    |||||||| || |||||| ||||||||||||| |||||||  ||  | ||||||||||| || |||||||| |||||||||||||| ||||  ||||| |    
T  5160395 gaaattctatttaagagattttgaaatgctttaccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcaaaactatct 5160494  T
Q  304 gtcctatg 311  Q
    | ||||||    
T  5160495 gccctatg 5160502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 5358031 - 5358121
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggca 294  Q
    ||||| || ||||| |||||||||||||||||||| |||||||| ||||| | |||||| || || ||||| ||| |||||||||| ||||    
T  5358031 gaaatccttttcaatagactttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacactggca 5358121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 5107707 - 5107771
Alignment:
Q  234 tttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcac 298  Q
    |||||||||||||| ||||| |||||||| || |||||||||||||| |||||||| || |||||    
T  5107707 tttccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccggaagcac 5107771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 287414 - 287451
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  287414 ttctcaaaaaggtcttataattagggacggagggagta 287451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 5457449 - 5457412
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  5457449 ttctcaaaaaggtcttataattagggacggagggagta 5457412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9388791 - 9388828
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  9388791 ttctcaaaaaggtcttataattagggacggagggagta 9388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 33487870 - 33487833
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33487870 ttctcaaaaaggtcttataattagggacggagggagta 33487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 5184754 - 5184838
Alignment:
Q  205 aaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacac 289  Q
    ||||| ||||||| ||||||||||| ||| |||||||||| || || || |||||||| || ||||| || |||| |||||||||    
T  5184754 aaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacac 5184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 5429797 - 5429722
Alignment:
Q  213 ttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaaca 288  Q
    ||||||||||||||||| ||||||||||| |||||| |||| || ||||| |  || ||||| ||| |||||||||    
T  5429797 ttcaagagactttgaaaggcttttccaaagtcaccgatttgatgtcgtacttgagatggatctacaccgtagaaca 5429722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 5429907 - 5429824
Alignment:
Q  112 ttaattacctggaatttagaactacgatgccagcaaggccagcaacctcacggagcacatctctccatttcaaggaagcgtctt 195  Q
    |||||||||||||||||| |||||| |  ||||||||| ||||  ||||||| ||  | |||||||||||||| ||| ||||||    
T  5429907 ttaattacctggaatttaaaactacaaatccagcaaggtcagctgcctcacgaagtgcgtctctccatttcaatgaatcgtctt 5429824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 6418135 - 6418170
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagtaac 55  Q
    |||||||||||||||||||||||| |||||||||||    
T  6418135 caaaaaggtcttataattagggacggagggagtaac 6418170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 12106064 - 12106103
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaac 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  12106064 ttctcaaaaaggtcttataattagggacggagagagtaac 12106103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 231105 - 231143
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagtaa 231143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 5366704 - 5366610
Alignment:
Q  213 ttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcagcactatttgtcc 307  Q
    ||||| ||| |||||||||||||||| || ||||||||||| ||||| || || || ||||| |||| | ||||||| || || || ||||||||    
T  5366704 ttcaaaagaatttgaaatgcttttccgaattcaccggtttgatgacggacttccgatggatctacattgaagaacactggaagaacaatttgtcc 5366610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 34301832 - 34301870
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  34301832 ttctcaaaagggtcttataattagggacggagggagtaa 34301870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4844437 - 4844400
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 8743225 - 8743188
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  8743225 ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 30248684 - 30248647
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  30248684 ttctcaaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 4323731 - 4323822
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcag 295  Q
    |||||||||||||| ||| || |||||| ||| ||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||||||    
T  4323731 gaaattctgttcaatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggcag 4323822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 4356956 - 4356865
Alignment:
Q  204 gaaattctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcag 295  Q
    |||||||||||||| ||| ||||||||| ||| ||||| |||||||||||  |||| || ||||| || |||||||| |||||||| |||||    
T  4356956 gaaattctgttcaaaagattttgaaatgatttaccaaagtcaccggtttgacgacgaacttcggaagggtcaacatcatagaacactggcag 4356865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 25708678 - 25708716
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  25708678 ttctcaaaaaggtcttataattagggacggagggagtaa 25708716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 1859181 - 1859144
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  1859181 ttctcaaaaaggtcttataattagggacggagggagta 1859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 6807466 - 6807429
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  6807466 ttctcaaaagggtcttataattagggacagagggagta 6807429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 29427529 - 29427493
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||| ||||||||||||||||||||||||||    
T  29427529 tctcaaaaagatcttataattagggacagagggagta 29427493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 54676584 - 54676549
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggag 51  Q
    |||||||||||||||||||||||||||| |||||||    
T  54676584 ttctcaaaaaggtcttataattagggacggagggag 54676549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 4332848 - 4332762
Alignment:
Q  209 tctgttcaagagactttgaaatgcttttccaaactcaccggtttggtgacgtacctcggagggatcaacatcgtagaacacaggcag 295  Q
    ||||||||| ||| ||||||| ||||| ||||| ||||| |||||   ||| || || |||||||  ||||||||||||||||||||    
T  4332848 tctgttcaaaagattttgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcag 4332762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 5743659 - 5743697
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  5743659 ttctcaaaagggtcttataattagggacggagggagtaa 5743697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 30771565 - 30771527
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagtaa 30771527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 34273219 - 34273257
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  34273219 ttctcaaaagggtcttataattagggacggagggagtaa 34273257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 45921468 - 45921430
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  45921468 ttctcaaaaaggtcttataattagggacaaaggtagtaa 45921430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 47806897 - 47806859
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  47806897 ttctcaaaagggtcttataattagggacggagggagtaa 47806859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 52978019 - 52977981
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  52978019 ttctcaaaagggtcttataattagggacggagggagtaa 52977981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4035862 - 4035825
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  4035862 ttctcaaaagggtcttataattagggacggagggagta 4035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 5375557 - 5375594
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  5375557 ttctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9328240 - 9328277
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9328240 ttctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32032993 - 32033030
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44294826 - 44294789
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  44294826 ttctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 45742806 - 45742843
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  45742806 ttctcaaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 15241517 - 15241477
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaact 56  Q
    |||||||||  ||||||||||||||||| ||||||||||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagtaact 15241477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 26626003 - 26626039
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||| |||||||||||||||||| |||||||||    
T  26626003 tctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 39833999 - 39834037
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  39833999 ttctcaaaaaggtcttataattagggactgagggagtaa 39834037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 5664675 - 5664638
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  5664675 ttctcaaaaaggtcttataattagggacggagggagta 5664638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 25624770 - 25624733
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  25624770 ttctcaaaaaggtcttataattagggacggagggagta 25624733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 8716892 - 8716932
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaact 56  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  8716892 ttctcaaaagggtcttataattagggacggagggagtaact 8716932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 2438262 - 2438224
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  2438262 ttctcaaaagggtcttataattagggacggagggagtaa 2438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 7491881 - 7491843
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  7491881 ttctcaaaagggtcttataattagggacggagggagtaa 7491843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 27560243 - 27560205
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  27560243 ttctcaaaagggtcttataattagggacggagggagtaa 27560205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 8990241 - 8990204
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  8990241 ttctcaaaaagatcttataattagggacggagggagta 8990204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11201720 - 11201683
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 11201947 - 11201980
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagta 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  11201947 caaaagggtcttataattagggacagagggagta 11201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 17408294 - 17408331
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  17408294 ttctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 18970729 - 18970766
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  18970729 ttctcaaaagggtcttataattagggacagaggtagta 18970766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 20252247 - 20252210
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  20252247 ttctcaaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 34062665 - 34062702
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 34883848 - 34883885
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  34883848 ttctcaaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36131028 - 36131065
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  36131028 ttctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 40607739 - 40607702
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  40607739 ttctcaaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41450553 - 41450516
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  41450553 ttctcaaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 8912874 - 8912914
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaact 56  Q
    ||||||||| |||||||||||||||||| |||| |||||||    
T  8912874 ttctcaaaagggtcttataattagggacggaggtagtaact 8912914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 10757984 - 10758016
Alignment:
Q  22 aaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||||||||||||||| ||||||||||    
T  10757984 aaaaggtcttataattagggacggagggagtaa 10758016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 65637 - 65674
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  65637 ttctcaaaaaggtcttataattagggacggagggagta 65674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11798642 - 11798605
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  11798642 ttctcaaaagggtcttataattagggacagagggagta 11798605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 51095 - 51135
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaact 56  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  51095 ttctcaaaagggtcttataattagggacggagggagtaact 51135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 2944272 - 2944316
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaactgttt 60  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||    
T  2944272 ttctcaaaagggtcttataattagggacggagggagtaattgttt 2944316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 39029215 - 39029176
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaac 55  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  39029215 ttctcaaaagggtcttataattagggacggagggagtaac 39029176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 1774379 - 1774341
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagtaa 1774341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 9035539 - 9035577
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  9035539 ttctcaaaatggtcttataattagggacggagggagtaa 9035577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 28192175 - 28192213
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  28192175 ttctcaaaagggtcttataattagggacggagggagtaa 28192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 44251121 - 44251159
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  44251121 ttctcaaaatggtcttataattagggacggagggagtaa 44251159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8251933 - 8251970
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  8251933 ttctcaaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8951428 - 8951465
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  8951428 ttctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13153965 - 13153928
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  13153965 ttctcaaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 18754181 - 18754144
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagta 18754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28572083 - 28572046
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28579676 - 28579639
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 32475231 - 32475264
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagta 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  32475231 caaaagggtcttataattagggacagagggagta 32475264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32675757 - 32675794
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  32675757 ttctcaaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 34490554 - 34490517
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  34490554 ttctcaaaaagatcttataattagggacggagggagta 34490517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 34568527 - 34568490
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 36786504 - 36786467
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  36786504 ttctcaaaaaggtcttataattagggacggaggaagta 36786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 40784928 - 40784891
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  40784928 ttctcaaaaaggtcttataattagggacggaggtagta 40784891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 41014540 - 41014503
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  41014540 tctcaaaaagatcttataattagggacggagggagtaa 41014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 26990599 - 26990567
Alignment:
Q  21 aaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||||||||||||||| |||||||||    
T  26990599 aaaaaggtcttataattagggacggagggagta 26990567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 44580879 - 44580911
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagg 48  Q
    |||||||||||||||||||||||||||| ||||    
T  44580879 ttctcaaaaaggtcttataattagggacggagg 44580911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44547463 - 44547426
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagggagta 44547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 26255133 - 26255095
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagtaa 26255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 39197755 - 39197717
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  39197755 ttctcaaaagggtcttataattagggacggagggagtaa 39197717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7449307 - 7449270
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7449307 ttctcaaaatggtcttataattagggacggagggagta 7449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 19920600 - 19920563
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  19920600 ttctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21295188 - 21295151
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  21295188 ttctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29286037 - 29286074
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  29286037 ttctcaaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32814470 - 32814433
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  32814470 ttctcaaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32872375 - 32872412
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  32872375 ttctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 33858866 - 33858903
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  33858866 ttctcaaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36698131 - 36698168
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 38858335 - 38858298
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  38858335 ttctcaaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39871613 - 39871650
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  39871613 ttctcaaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 40300266 - 40300229
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  40300266 tctcaaaagggtcttataattagggacggagggagtaa 40300229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41026096 - 41026133
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  41026096 ttctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41252361 - 41252398
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  41252361 ttctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 10475965 - 10475993
Alignment:
Q  19 tcaaaaaggtcttataattagggacagag 47  Q
    |||||||||||||||||||||||||||||    
T  10475965 tcaaaaaggtcttataattagggacagag 10475993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32147331 - 32147294
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  32147331 ttctcaaaaaggtcttataattagggacggagggagta 32147294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 1265986 - 1265948
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  1265986 ttctcaaaagggtcttataattagggacggagggagtaa 1265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 5528011 - 5527974
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  5528011 ttctcaaaaaggtcttataattaaggacggagggagta 5527974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 6673228 - 6673265
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7951598 - 7951561
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  7951598 tctcaaaagggtcttataattagggacggagggagtaa 7951561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 9828430 - 9828393
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9828430 ttctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 14570893 - 14570930
Alignment:
Q  19 tcaaaaaggtcttataattagggacagagggagtaact 56  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  14570893 tcaaaaaggtcttataattagggacggaggtagtaact 14570930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 14913685 - 14913648
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 16127296 - 16127259
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  16127296 ttctcaaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 22527729 - 22527692
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  22527729 ttctcaaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 26894873 - 26894910
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagta 26894910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 40004409 - 40004446
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  40004409 ttctcaaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 13661124 - 13661156
Alignment:
Q  21 aaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||||||||||||||| |||||||||    
T  13661124 aaaaaggtcttataattagggacggagggagta 13661156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 34662240 - 34662204
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||| |||||||||||||||||| |||||||||    
T  34662240 tctcaaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23700785 - 23700822
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23700785 ttctcaaaaaggtcttataattagggacggagggagta 23700822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23719240 - 23719277
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23719240 ttctcaaaaaggtcttataattagggacggagggagta 23719277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23737696 - 23737733
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23737696 ttctcaaaaaggtcttataattagggacggagggagta 23737733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 43701215 - 43701178
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43701215 ttctcaaaagggtcttataattagggacagagggagta 43701178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 4024088 - 4024049
Alignment:
Q  17 tctcaaaaaggtcttataattagggacagagggagtaact 56  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  4024088 tctcaaaagggtcttataattagggacggagggagtaact 4024049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 26593765 - 26593804
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaac 55  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  26593765 ttctcaaaagggtcttataattagggacggagggagtaac 26593804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 45049025 - 45049060
Alignment:
Q  19 tcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||||||||||||| |||||||||||||||    
T  45049025 tcaaaaaggtcttataattaaggacagagggagtaa 45049060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 10220970 - 10220932
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagtaa 10220932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 14428647 - 14428609
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagtaa 14428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 21756523 - 21756485
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagtaa 21756485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 46049761 - 46049727
Alignment:
Q  19 tcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||| |||||||||||||||||||||||    
T  46049761 tcaaaaaggtcctataattagggacagagggagta 46049727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 46049986 - 46050024
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  46049986 ttctcaaaagggtcttataattagggacggagggagtaa 46050024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 49127198 - 49127236
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  49127198 ttctcaaaaaggtcttataattagggacggagggggtaa 49127236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7181387 - 7181350
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7181387 ttctcaaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9499497 - 9499534
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9499497 ttctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 12050392 - 12050429
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 12683182 - 12683219
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  12683182 ttctcaaaatggtcttataattagggacggagggagta 12683219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 22103929 - 22103966
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  22103929 ttctcaaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 25149122 - 25149159
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  25149122 ttctcaaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 35868083 - 35868120
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  35868083 ttctcaaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 36099228 - 36099261
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagta 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  36099228 caaaagggtcttataattagggacagagggagta 36099261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 37728750 - 37728713
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  37728750 ttctcaaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 43868140 - 43868103
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44543819 - 44543782
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  44543819 ttctcaaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 45252810 - 45252773
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  45252810 ttctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 51283835 - 51283802
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagta 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  51283835 caaaagggtcttataattagggacagagggagta 51283802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 51284062 - 51284099
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 53271630 - 53271593
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  53271630 ttctcaaaaaggtcttataattaaggacagagagagta 53271593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 53361855 - 53361892
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  53361855 ttctcaaaatggtcttataattagggacggagggagta 53361892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 52059018 - 52058982
Alignment:
Q  20 caaaaaggtcttataattagggacagagggagtaact 56  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  52059018 caaaagggtcttataattagggacggagggagtaact 52058982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39750381 - 39750418
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  39750381 ttctcaaaagggtcttataattagggacagagggagta 39750418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 36695118 - 36695153
Alignment:
Q  19 tcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||| |||||||||||||||||||||||||||||    
T  36695118 tcaaaagggtcttataattagggacagagggagtaa 36695153  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 36711219 - 36711254
Alignment:
Q  19 tcaaaaaggtcttataattagggacagagggagtaa 54  Q
    |||||| |||||||||||||||||||||||||||||    
T  36711219 tcaaaagggtcttataattagggacagagggagtaa 36711254  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 943637 - 943675
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagtaa 943675  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 15811232 - 15811270
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  15811232 ttctcaaaagggtcttataattagggacggagggagtaa 15811270  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 30290302 - 30290264
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  30290302 ttctcaaaagggtcttataattagggacggagggagtaa 30290264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 39363194 - 39363232
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  39363194 ttctcaaaagggtcttataattagggacggagggagtaa 39363232  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 44649666 - 44649628
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  44649666 ttctcaaaagggtcttataattagggacggagggagtaa 44649628  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 49907058 - 49907020
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagtaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  49907058 ttctcaaaagggtcttataattagggacggagggagtaa 49907020  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1039381 - 1039418
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  1039381 ttctcaaaagggtcttataattagggacggagggagta 1039418  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1046287 - 1046324
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  1046287 ttctcaaaagggtcttataattagggacggagggagta 1046324  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4102714 - 4102751
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  4102714 ttctcaaaagggtcttataattagggacggagggagta 4102751  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 11741434 - 11741397
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  11741434 ttctcaaaagggtcttataattagggacggagggagta 11741397  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 23542016 - 23541979
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  23542016 ttctcaaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 36694891 - 36694854
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  36694891 ttctcaaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 36710992 - 36710955
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  36710992 ttctcaaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 37951949 - 37951986
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  37951949 ttctcaaaagggtcttataattagggacggagggagta 37951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 39497470 - 39497433
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  39497470 ttctcaaaagggtcttataattagggacggagggagta 39497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 45039449 - 45039412
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  45039449 ttctcaaaagggtcttataattagggacggagggagta 45039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 46075867 - 46075904
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  46075867 ttctcaaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 50008012 - 50007975
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    |||||||||  |||||||||||||||||||||||||||    
T  50008012 ttctcaaaagagtcttataattagggacagagggagta 50007975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 52431174 - 52431211
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  52431174 ttctcaaaagggtcttataattagggacggagggagta 52431211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 30289862 - 30289898
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagt 52  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  30289862 ttctcaaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 3782 - 3819
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  3782 ttctcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 12102 - 12065
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagta 12065  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 51682 - 51719
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  51682 ttctcaaaagggtcttataattagggacggagggagta 51719  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 47677 - 47640
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagta 47640  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 259122 - 259159
Alignment:
Q  16 ttctcaaaaaggtcttataattagggacagagggagta 53  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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