View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11327_high_2 (Length: 628)
Name: NF11327_high_2
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11327_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 73 - 618
Target Start/End: Complemental strand, 33717792 - 33717247
Alignment:
| Q |
73 |
aagatgctctaaaggttgataaagctaaggttggtgaaagcaaacaaatcgactttgtcaaatgaggtggcagtacagaaactgtaaggttcatttcttt |
172 |
Q |
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| T |
33717792 |
aagatgctctaaaggttgataaagctaaggttggtgaaagcaaacaaatcgactttgtcaaatgaggtggcagtacaggaactgtaaggtttatttcttt |
33717693 |
T |
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| Q |
173 |
actaattatatttgtcttcctgtttgtgattattctattcgtttgcttcagaaacttgtgtatctgagaggacatggtaaaataccttttgaagcttgaa |
272 |
Q |
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| T |
33717692 |
actaattatatttgtcttcctgtttgtgattattctatttgtttgcttcataaacttgtgtatctgagaggacatggtaaaataccttttgaagcttgat |
33717593 |
T |
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| Q |
273 |
gtcaattctgcttactatgatccgaaaacctgttctatgtgaggggatccccttctggctgacgctgatcgtaataagaagtttttggattatcatgcat |
372 |
Q |
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| T |
33717592 |
gtcaattctgcttactatgatccgaaaacctgttctatgtgaggggatccccttctggccgacgctgatcctaataagaagtttttggattatcatgcat |
33717493 |
T |
|
| Q |
373 |
ttgttcaattnnnnnnnnngtgttaggtatgacttctagtttattgataagtgaacaagtgacgctcaattatcccatggtacggttcgtgtgtaatttt |
472 |
Q |
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| T |
33717492 |
ttgttcaattaaaaaaaaagtgttaggtatgacttatagtttactgataagtgaacaagtgacgctcaattatcccatggtacggttcgtgtgtaatttt |
33717393 |
T |
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| Q |
473 |
gtaatctacactgcagtatttgaacataagttttaatctgtaaaccttaagcttgattatcaataaaaaagtactgcagccactctgcaatcttagactt |
572 |
Q |
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| T |
33717392 |
gtaatctacactgcagtatttgaacataagttttaatctgtaaaccttaagctttattattaatagaaaagtactgcagccactctgcaatcttagactt |
33717293 |
T |
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| Q |
573 |
agccacaattggtcgagctccttgatcaaatcttgtgtgttctctg |
618 |
Q |
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| T |
33717292 |
agccacaattggtcgagctccttgatcaaatcttgtgtgttctctg |
33717247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 33717963 - 33717904
Alignment:
| Q |
19 |
caacctagatcgatcaaatggttataatacagcaacctatgctaatgtcattgaaagatg |
78 |
Q |
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| T |
33717963 |
caacctagatcgatcaaatggttataatacagcaacctatgctaatgtcattgaaagatg |
33717904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 531
Target Start/End: Original strand, 2447166 - 2447210
Alignment:
| Q |
487 |
agtatttgaacataagttttaatctgtaaaccttaagcttgatta |
531 |
Q |
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| T |
2447166 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatta |
2447210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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