View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11327_high_7 (Length: 310)
Name: NF11327_high_7
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11327_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 41841403 - 41841694
Alignment:
| Q |
1 |
ccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaattattatttttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41841403 |
ccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaatgattatttttaa |
41841502 |
T |
|
| Q |
101 |
ttgctggcaatacatatacagttagcataaactaaaatcaactttccagaatcagtgattcgttttatatgcagaccacaaatctatttacacataatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41841503 |
ttgctggcaatacatatacagttagcataaactaaaatcaactttccagaatcagtgattcgttttatatgcagaccacaaatctatttacacataatca |
41841602 |
T |
|
| Q |
201 |
taatcatcagaataaataccaacattacctacaatgaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagttt |
292 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41841603 |
taatcgtcagaataaataccaacattacctacaatgaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagttt |
41841694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42221092 - 42221192
Alignment:
| Q |
1 |
ccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaattattatttttaa |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
42221092 |
ccaaacaaaggatatatgatttgagcttccaacaaggacaaatctcatgccaacaatacgttttacagattttgagaagctctccaatgaatatttttaa |
42221191 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
42221192 |
t |
42221192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 41841773 - 41841814
Alignment:
| Q |
106 |
ggcaatacatatacagttagcataaactaaaatcaactttcc |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41841773 |
ggcaatacatatacagttagcataaactaaaatcaactttcc |
41841814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1716699 - 1716799
Alignment:
| Q |
1 |
ccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaattattatttttaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
1716699 |
ccaaacaaaggatacgtgatttgagcttccaacaaggacaaatctcatgccaacaatacattttacagattttgagaagctctccaatgaatatttttaa |
1716798 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
1716799 |
t |
1716799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 3461392 - 3461488
Alignment:
| Q |
2 |
caagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaattattatttttaat |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
3461392 |
caagcaaaggatacatgatttgagcttccaacaaggacaaatcttttgcca---atacattttacagattttgagaagctctccaatgaatatttttaat |
3461488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2841269 - 2841313
Alignment:
| Q |
1 |
ccaagcaaaggatacgtgatttgagcttccaacaaggacaaatct |
45 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2841269 |
ccaagcaaaggatgcgtgatttgagcttccaacaaggacaaatct |
2841313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University