View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11327_low_11 (Length: 269)

Name: NF11327_low_11
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11327_low_11
NF11327_low_11
[»] chr5 (2 HSPs)
chr5 (86-250)||(34219332-34219496)
chr5 (15-75)||(42561317-42561377)
[»] chr2 (2 HSPs)
chr2 (83-172)||(4703959-4704048)
chr2 (47-84)||(8295321-8295358)
[»] chr8 (2 HSPs)
chr8 (15-84)||(8797265-8797334)
chr8 (99-147)||(5519780-5519828)
[»] chr7 (2 HSPs)
chr7 (22-85)||(43081251-43081314)
chr7 (47-87)||(28016545-28016585)
[»] chr6 (1 HSPs)
chr6 (47-85)||(13011120-13011158)
[»] chr3 (4 HSPs)
chr3 (47-84)||(51972005-51972042)
chr3 (85-157)||(30720130-30720202)
chr3 (47-87)||(33212394-33212434)
chr3 (49-77)||(38071202-38071230)
[»] chr4 (1 HSPs)
chr4 (47-75)||(16545983-16546011)
[»] chr1 (1 HSPs)
chr1 (48-84)||(25271198-25271234)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 34219496 - 34219332
Alignment:
Q  86 tagtaaatcatgtcttttttgcttgacaacaaacccaattaatcatcccttatcgatcttcacatttcttttcaaggacaacatattatgcaacacaata 185  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34219496 tagtaaatcatgtcttttttgcttgacaacgaacccaattaatcatccgttatggatcttcacatttcttttcaaggacaacatattatgcaacacaata 34219397  T
Q  186 gaatagaacttcggatccagctttggaacgacagaatgttcaaccatatctatgtatatatcaca 250  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34219396 gaatagaatttcggatccagctttggaacgacagaatgttcaaccatatctatgtatatatcaca 34219332  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 42561317 - 42561377
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaaggatcttataattaaggacg 75  Q
    |||| |||||||||||||||||||        |||||||||||||||||||||||||||||    
T  42561317 caaatgggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattaaggacg 42561377  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 4703959 - 4704048
Alignment:
Q  83 taatagtaaatcatgtcttttttgcttgacaacaaacccaattaatcatcccttatcgatcttcacatttcttttcaaggacaacatatt 172  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||||||| ||| |||||||||| ||||||||| ||| |||| |||||    
T  4703959 taatagtaaatcatgcctttcttgcatgacaacaaacacaattaatcatctcttctcgatcttcatatttctttttaagtacaaaatatt 4704048  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 8295358 - 8295321
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacgaaagtagta 84  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  8295358 ttctcaaaaggatcttataattagggacgaaggtagta 8295321  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8797265 - 8797334
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaaggatcttataattaaggacgaaagtagta 84  Q
    ||||||||||||||||||||||||        ||||||||||| ||||||||||||||||| ||||||||    
T  8797265 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggaagtagta 8797334  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 5519780 - 5519828
Alignment:
Q  99 cttttttgcttgacaacaaacccaattaatcatcccttatcgatcttca 147  Q
    |||| ||||||||||||||| ||||||||||| | ||| ||||||||||    
T  5519780 ctttcttgcttgacaacaaatccaattaatcaactcttctcgatcttca 5519828  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 43081314 - 43081251
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaaggatcttataattaaggacgaaagtagtaa 85  Q
    |||||||||||||||||        ||||||||||||||||||||||| ||||||| |||||||    
T  43081314 gtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacgaaggtagtaa 43081251  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 28016545 - 28016585
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacgaaagtagtaata 87  Q
    ||||||||||| ||||||||||| ||||| |||||||||||    
T  28016545 ttctcaaaagggtcttataattagggacggaagtagtaata 28016585  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 13011120 - 13011158
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacgaaagtagtaa 85  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  13011120 ttctcaaaaggatcttataattaaggacggaggtagtaa 13011158  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 51972042 - 51972005
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacgaaagtagta 84  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  51972042 ttctcaaaaggaccttataattaaggacgaatgtagta 51972005  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 30720202 - 30720130
Alignment:
Q  85 atagtaaatcatgtcttttttgcttgacaacaaacccaattaatcatcccttatcgatcttcacatttctttt 157  Q
    |||||||||||||  ||| |||||||||||  |||| ||||||| ||| ||| |||||||||| | |||||||    
T  30720202 atagtaaatcatgcatttcttgcttgacaatgaaccaaattaataatctcttttcgatcttcatacttctttt 30720130  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 33212434 - 33212394
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacgaaagtagtaata 87  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  33212434 ttctcaaaaggatcttataattagggacggaggtagtaata 33212394  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 38071230 - 38071202
Alignment:
Q  49 ctcaaaaggatcttataattaaggacgaa 77  Q
    |||||||||||||||||||||||||||||    
T  38071230 ctcaaaaggatcttataattaaggacgaa 38071202  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 16545983 - 16546011
Alignment:
Q  47 ttctcaaaaggatcttataattaaggacg 75  Q
    |||||||||||||||||||||||||||||    
T  16545983 ttctcaaaaggatcttataattaaggacg 16546011  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 25271234 - 25271198
Alignment:
Q  48 tctcaaaaggatcttataattaaggacgaaagtagta 84  Q
    |||||||||||||||||||||||||||| | ||||||    
T  25271234 tctcaaaaggatcttataattaaggacggatgtagta 25271198  T

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