View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11327_low_4 (Length: 496)

Name: NF11327_low_4
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11327_low_4
NF11327_low_4
[»] chr7 (5 HSPs)
chr7 (252-490)||(12138950-12139189)
chr7 (260-300)||(32735039-32735079)
chr7 (252-294)||(32733885-32733927)
chr7 (260-298)||(41237743-41237781)
chr7 (259-300)||(7202974-7203015)
[»] chr5 (3 HSPs)
chr5 (17-244)||(13463551-13463787)
chr5 (265-299)||(3958340-3958374)
chr5 (259-299)||(39149470-39149510)
[»] chr1 (2 HSPs)
chr1 (283-467)||(41466244-41466428)
chr1 (283-467)||(45320487-45320671)
[»] chr3 (3 HSPs)
chr3 (259-390)||(34826626-34826759)
chr3 (260-297)||(34825090-34825127)
chr3 (260-297)||(53145484-53145521)
[»] chr8 (2 HSPs)
chr8 (283-390)||(26520894-26521004)
chr8 (263-299)||(40646203-40646239)
[»] chr4 (2 HSPs)
chr4 (260-298)||(55010851-55010889)
chr4 (323-415)||(29059265-29059358)
[»] chr2 (2 HSPs)
chr2 (279-335)||(3230096-3230153)
chr2 (263-299)||(42946924-42946960)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 252 - 490
Target Start/End: Complemental strand, 12139189 - 12138950
Alignment:
Q  252 ggtgaggtttcacatgggaaggttgattcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttgtcattggttttgttt 350  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  12139189 ggtgaggtttcacatgggaagattgattcttttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgttt 12139090  T
Q  351 ggaattgcagttgagacaaaaaatgattaatgacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatc 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12139089 ggaattgcagttgagacaaaaaatgattaatgacttattatattatattgtgaactacacctccccattcttaaaaaataactatccacaccacaaaatc 12138990  T
Q  451 tacacacaaaaaacacgattagccactccattcttctctc 490  Q
     |||||||||||||||| ||||||||||||||||||||||    
T  12138989 cacacacaaaaaacacggttagccactccattcttctctc 12138950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 32735079 - 32735039
Alignment:
Q  260 ttcacatgggaaggttgattcctttcccaccatgggaaagg 300  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  32735079 ttcacatgggaaggttgattcctttcccatcatgggaaagg 32735039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 32733885 - 32733927
Alignment:
Q  252 ggtgaggtttcacatgggaaggttgattcctttcccaccatgg 294  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  32733885 ggtgaggtttcacatgggaaagttgattcctttcccatcatgg 32733927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 41237781 - 41237743
Alignment:
Q  260 ttcacatgggaaggttgattcctttcccaccatgggaaa 298  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  41237781 ttcacatgggaaggttgattcctttcccatcatgggaaa 41237743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 7202974 - 7203015
Alignment:
Q  259 tttcacatgggaaggttgattcctttcccaccatgggaaagg 300  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  7202974 tttcacattggaaggttaattcctttcccaccatgggaaagg 7203015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 13463551 - 13463787
Alignment:
Q  17 agttaacatgtttccaatgataatgttttttacatgttccattgttgaattcaaattatttctaatgattttgtattacaattaactaattatgatatga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13463551 agttaacatgtttccaatgataatgttttttacatgttccattgttgaattcaaataatttctaatgattttgtattacaattaactaattatgatatga 13463650  T
Q  117 cgattacaaaattcaattcttatg--nnnnnnnnccataatttccctgcaccagagttatttattagagatattggttagttacaag------ttaatca 208  Q
    ||||||||||||| ||||| ||||          ||||||||||||||||||||||||||||||||||||||  |||||||||||||      |||||||    
T  13463651 cgattacaaaattaaattcgtatgttttttttttccataatttccctgcaccagagttatttattagagataaaggttagttacaagttagtattaatca 13463750  T
Q  209 ta-ccctcctgattggaatttgaaacttgattggttt 244  Q
    || |||||||| |||||||||||||||||||||||||    
T  13463751 tacccctcctggttggaatttgaaacttgattggttt 13463787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 3958340 - 3958374
Alignment:
Q  265 atgggaaggttgattcctttcccaccatgggaaag 299  Q
    ||||||||| |||||||||||||||||||||||||    
T  3958340 atgggaagggtgattcctttcccaccatgggaaag 3958374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 39149510 - 39149470
Alignment:
Q  259 tttcacatgggaaggttgattcctttcccaccatgggaaag 299  Q
    ||||||||||||| | ||| |||||||||||||||||||||    
T  39149510 tttcacatgggaaaggtgaatcctttcccaccatgggaaag 39149470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 41466244 - 41466428
Alignment:
Q  283 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgattaat 381  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  41466244 ttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagctgagacaaaaaatgattaat 41466343  T
Q  382 gacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatctacacacaaaaaacacg 467  Q
     |||||||||||||||  ||||||||||||| |||||| || |||||||| |||||||||||||||||| | ||||| ||||||||    
T  41466344 aacttattatattatattgtgaactacacct-cccattttttaaaaataactatccacaccacaaaatccaaacacacaaaacacg 41466428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 45320487 - 45320671
Alignment:
Q  283 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgattaat 381  Q
    |||||||||||||||| | | |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  45320487 ttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaat 45320586  T
Q  382 gacttattatattatagcgtgaactacacctccccattcttaaaaaataattatccacaccacaaaatctacacacaaaaaacacg 467  Q
    ||||||||||||||||  |||||| |||||| |||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||    
T  45320587 gacttattatattatattgtgaaccacacct-cccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacg 45320671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 259 - 390
Target Start/End: Complemental strand, 34826759 - 34826626
Alignment:
Q  259 tttcacatgggaaggttgattcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttgtcattggttttgtttggaattg 357  Q
    |||||||||||||||   | ||| || |||| |||||||| | ||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  34826759 tttcacatgggaaggggcaatccctttccactatgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgtttggaattg 34826660  T
Q  358 cagttgagacaa-aaaatgattaatgacttatta 390  Q
    || ||||||||| |||||||||||||||||||||    
T  34826659 cacttgagacaaaaaaatgattaatgacttatta 34826626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 34825090 - 34825127
Alignment:
Q  260 ttcacatgggaaggttgattcctttcccaccatgggaa 297  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  34825090 ttcacatgggaaggtggattcctttcccatcatgggaa 34825127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 53145521 - 53145484
Alignment:
Q  260 ttcacatgggaaggttgattcctttcccaccatgggaa 297  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  53145521 ttcacatgggaaggttgattccttttcaaccatgggaa 53145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 283 - 390
Target Start/End: Original strand, 26520894 - 26521004
Alignment:
Q  283 ttcccaccatgggaaaggaggtttt-tacctgcaatagccagtcaaacaagttgtcattggttttgtttggaattgcagttgagac-aaaaaatgattaa 380  Q
    |||||||||||||||| | |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||    
T  26520894 ttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgtttggaattgcacttgagacaaaaaaatgattaa 26520993  T
Q  381 t-gacttatta 390  Q
    | |||||||||    
T  26520994 tggacttatta 26521004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 40646203 - 40646239
Alignment:
Q  263 acatgggaaggttgattcctttcccaccatgggaaag 299  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40646203 acatgggaaggatgattcctttcccaccatgggaaag 40646239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 55010851 - 55010889
Alignment:
Q  260 ttcacatgggaaggttgattcctttcccaccatgggaaa 298  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55010851 ttcacatgggaaggttgattcctttcccaccatgggaaa 55010889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 29059265 - 29059358
Alignment:
Q  323 gtcaaacaagttgtcattggttttgtttggaattgcagttgagacaaaaaatgatt-aatgacttattatattatagcgtgaactacacctccc 415  Q
    |||||||| |||| |||||||||||||||| ||| || || || |||||||| ||| ||| |||||||||| || |  ||||||||||||||||    
T  29059265 gtcaaacatgttgacattggttttgtttggtatttcacttcagccaaaaaatcattaaataacttattatactaaattgtgaactacacctccc 29059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 3230153 - 3230096
Alignment:
Q  279 tcctttcccaccatgggaaaggaggttttt-acctgcaatagccagtcaaacaagttg 335  Q
    |||||| ||||||||||||||| ||||||| |||||||||||| ||||||||| ||||    
T  3230153 tccttttccaccatgggaaaggtggttttttacctgcaatagcaagtcaaacaggttg 3230096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 42946924 - 42946960
Alignment:
Q  263 acatgggaaggttgattcctttcccaccatgggaaag 299  Q
    ||||||||||| |||||||||||||||||||||||||    
T  42946924 acatgggaaggatgattcctttcccaccatgggaaag 42946960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University