View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11327_low_5 (Length: 431)
Name: NF11327_low_5
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11327_low_5 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 28504023 - 28504433
Alignment:
| Q |
1 |
aaatccaaaccctaagtaactaaaaagatcatttctaacatctcgatttataggaataatatgttttataagcaaattcttatgtaccctgaaatttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28504023 |
aaatccaaaccctaagtaactaaaaagatcatttctaaaattccgatttataggaataatatgttttataagcaaattcttatgtaccctgaaatttggt |
28504122 |
T |
|
| Q |
101 |
ttgataacagtacctcgtagacataatttgttcaaaatttagtttcatctttaaataaattaatacaaaaatatgacatgatgtgtaataattaaatggt |
200 |
Q |
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||||||||| || | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
28504123 |
ttgataacattatcccgtagacataactcgttcaaaatttagtttcatctttaaataaattaatacaaaaatataacatgatgtttaataattaaatggt |
28504222 |
T |
|
| Q |
201 |
gggtacatatccaacgaaacttcaagttaccattgtatacacttcttttaaagatttaagcatattgacctataaaaaagagttgagtttaaaaatttat |
300 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
28504223 |
gggtacatatccaaccaaacttcaagttactattgtatacacttcttttaaagatttaagcatattgatctataaaaaagggttgagtttaaaaatttat |
28504322 |
T |
|
| Q |
301 |
gaaagtgatcgattttaaaagctttatcatgcagcaatttttccctctttaacctattagaactttagtttactttgagatatagatcaaatgacgaatc |
400 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28504323 |
g-aagtgatagattttaaaagctttatcatgcagcaatttttccctctttaacctattagaactttagtttactttgagatatagatcaaatgacgaatc |
28504421 |
T |
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| Q |
401 |
tttaaacaggtt |
412 |
Q |
| |
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|||||||||||| |
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| T |
28504422 |
tttaaacaggtt |
28504433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 180
Target Start/End: Complemental strand, 1589026 - 1588995
Alignment:
| Q |
149 |
ctttaaataaattaatacaaaaatatgacatg |
180 |
Q |
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| T |
1589026 |
ctttaaataaattaatacaaaaatatgacatg |
1588995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 11540046 - 11539975
Alignment:
| Q |
155 |
ataaattaatacaaaaatatgacatgatgtgtaataattaaatggtgggtacatatccaacgaaacttcaag |
226 |
Q |
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| T |
11540046 |
ataaattaatataaaaatatgacatgacatttaatgattggaagatgggtacatatccaaccaaacttcaag |
11539975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 46939050 - 46939079
Alignment:
| Q |
151 |
ttaaataaattaatacaaaaatatgacatg |
180 |
Q |
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| T |
46939050 |
ttaaataaattaatacaaaaatatgacatg |
46939079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 9948 - 9888
Alignment:
| Q |
150 |
tttaaataaattaatacaaaaatatgacatgatgtgtaataattaaatggtgggtacatat |
210 |
Q |
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|||||||||||||||| ||||||||||||||| || ||||||| ||| | ||||||||| |
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| T |
9948 |
tttaaataaattaatataaaaatatgacatgacgttgaataatttgatgattggtacatat |
9888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 41360138 - 41360170
Alignment:
| Q |
150 |
tttaaataaattaatacaaaaatatgacatgat |
182 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
41360138 |
tttaaataaattaatacaaaaatatgatatgat |
41360170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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