View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11327_low_7 (Length: 384)
Name: NF11327_low_7
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11327_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 138 - 374
Target Start/End: Complemental strand, 552623 - 552385
Alignment:
| Q |
138 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcat |
237 |
Q |
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| T |
552623 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcat |
552524 |
T |
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| Q |
238 |
atccatcggggtttaaatcttatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaata |
337 |
Q |
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| T |
552523 |
atccatcggggtttaaatcttatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaata |
552424 |
T |
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| Q |
338 |
ttggcatctttctgcac--gccaacatattatgtctctg |
374 |
Q |
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| T |
552423 |
ttggcatctttctgcacgtgccaacatattatgtctctg |
552385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 552776 - 552679
Alignment:
| Q |
20 |
gtaagagaataagagatagtgtagacctgcatgtgatttgaaatccccaacatcatttactgaactgaactaattaattcaccactcaattatatcaa |
117 |
Q |
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| T |
552776 |
gtaagagaataagagatagtgtagacctgcatgtgatttgaaatccccaacatcatttactgaactgaactaattaattcaccactcaattatatcaa |
552679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 546550 - 546489
Alignment:
| Q |
22 |
aagagaataagagatagtgtagacctgcatgtgatttgaaatccccaacatcatttactgaa |
83 |
Q |
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| T |
546550 |
aagagaataagatatagtgtagaccagcatgtgatttgaaatcccgaatatcatttgctgaa |
546489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 51114421 - 51114543
Alignment:
| Q |
140 |
ctatggtttggtgttaatattattc---tgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactca |
236 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||| | ||||| ||||||||||| ||||| ||||| ||| |
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| T |
51114421 |
ctatggtttggtgttaatattattctagtacaaatttaattcttgattatctctttc-tttttttagatatctgagaaaatat--tctgcaaattattca |
51114517 |
T |
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| Q |
237 |
tatccatcggggtttaaatcttattt |
262 |
Q |
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| T |
51114518 |
tgtccattggtgtttgaaccttattt |
51114543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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