View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11327_low_8 (Length: 333)
Name: NF11327_low_8
Description: NF11327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11327_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 31583118 - 31582815
Alignment:
| Q |
14 |
agaggactatttgcaaggactatgtccaacaaaacttgtcaacacaacattagaccctgacctctttgtttatggtcctgactacaataatcttacactc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31583118 |
agaggactatttgcaaggactatgtccaacaaaacttgtcaacacaacattagaccccgacctctttgtttatggtcctgactacaataatcttacactc |
31583019 |
T |
|
| Q |
114 |
ttctatggttgtccaccttcaattaatttccctttgaacgggcgctttctatgtccttcaaatggatattctgatgaatttgtttatacttggtttgggt |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31583018 |
ttctatggttgtccaccttcaattactttccctttgaacgggcgctttctatgtccttcaaatggatattctgatgaatttgtttatacttggtttgggt |
31582919 |
T |
|
| Q |
214 |
ctaatcttgatcctcaagctttttcatgccgagaaagtatggttgttccagtcttgaattcgttgattgctgttggtgatttgagtagaatacgaagtgc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31582918 |
ataatcttgatcctcaagctttttcatgccgagaaagtatggttgttccagtcttgaattcgttgattgctgttggtgatttgactagaatacgaagtgc |
31582819 |
T |
|
| Q |
314 |
aatc |
317 |
Q |
| |
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|||| |
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| T |
31582818 |
aatc |
31582815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 31641724 - 31641421
Alignment:
| Q |
14 |
agaggactatttgcaaggactatgtccaacaaaacttgtcaacacaacattagaccctgacctctttgtttatggtcctgactacaataatcttacactc |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641724 |
agaggactatttgcaaggactatgtccaacaaaacttgtcaacacaacattagaccccgacctctttgtttatggtcctgactacaataatcttacactc |
31641625 |
T |
|
| Q |
114 |
ttctatggttgtccaccttcaattaatttccctttgaacgggcgctttctatgtccttcaaatggatattctgatgaatttgtttatacttggtttgggt |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641624 |
ttctatggttgtccaccttcaattactttccctttgaacgggcgctttctatgtccttcaaatggatattctgatgaatttgtttatacttggtttgggt |
31641525 |
T |
|
| Q |
214 |
ctaatcttgatcctcaagctttttcatgccgagaaagtatggttgttccagtcttgaattcgttgattgctgttggtgatttgagtagaatacgaagtgc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31641524 |
ataatcttgatcctcaagctttttcatgccgagaaagtatggttgttccagtcttgaattcgttgattgctgttggtgatttgactagaatacgaagtgc |
31641425 |
T |
|
| Q |
314 |
aatc |
317 |
Q |
| |
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|||| |
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|
| T |
31641424 |
aatc |
31641421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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