View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11328_high_1 (Length: 456)
Name: NF11328_high_1
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11328_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 149 - 407
Target Start/End: Original strand, 23386246 - 23386505
Alignment:
| Q |
149 |
cgagcttgattctattctatatctcaattcaatccttttcaatgagaataaaatacaatcaaaataaaaccaatcaataaactaattaattttcagttaa |
248 |
Q |
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| T |
23386246 |
cgagcttgattctattctatatctcaattcaatcctgcccaatgagaataaaatacaatcaaaataaaaccaatcattaaactaattaatttttagttaa |
23386345 |
T |
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| Q |
249 |
atgaatagaacaccaatcggttcggtctgatttttaaaacactaatcccaaaaacatcaaagattttggcatcactgtccatatcatagttgtggacc-t |
347 |
Q |
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| T |
23386346 |
atgaatagaacaccgatcggttcggtctgatttttaaaacattagtcccaaaaacatcaaagattttagcatcactgtccatatcatagttgtggacctt |
23386445 |
T |
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| Q |
348 |
tttttctaaattgtgtttcttagtggaaaagaagtggacttctaattttgtaaaggtggg |
407 |
Q |
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| T |
23386446 |
tttttctaaattgtgtttattagtggaaaagaagtggacttctaattttgtaaaggtggg |
23386505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 23386099 - 23386193
Alignment:
| Q |
2 |
tttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386099 |
tttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaagtgga |
23386193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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