View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11328_high_10 (Length: 322)
Name: NF11328_high_10
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11328_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 38937219 - 38936903
Alignment:
| Q |
1 |
ctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctact |
100 |
Q |
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| T |
38937219 |
ctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctact |
38937120 |
T |
|
| Q |
101 |
tttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcctttcagggtcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38937119 |
tttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcatt |
38937020 |
T |
|
| Q |
201 |
gccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937019 |
gccgaaatctttgagaaattgttcatcttttataagaattaggcttgatgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaat |
38936920 |
T |
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| Q |
301 |
cttagtttcatctcact |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
38936919 |
cttagtttcatctcact |
38936903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 39305733 - 39306046
Alignment:
| Q |
1 |
ctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctact |
100 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
39305733 |
ctaactgccttaacttctttttctgtgttcaccaataacttctcaggaagcatttccagagattttggaaagaacagtccttctttgactcatgtctact |
39305832 |
T |
|
| Q |
101 |
tttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcctttcagggtcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||| ||||| || ||| |||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
39305833 |
tttcaaacaatagtttctcaggagaacttccttctgaattatgcagtggccacaatctagttgttttggccgtaaataacaacagcttttcaggatcatt |
39305932 |
T |
|
| Q |
201 |
gccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaat |
300 |
Q |
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||| || || ||||||||||||||||| || | |||| |||||||||| |||||| |||||| |||||| ||||||||| |||||||||||||| ||||| |
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| T |
39305933 |
gccaaactccttgagaaattgttcatccttaacaagagttaggcttgatgataacaagttcagtggaaacatcacagaatcatttgggattcatacaaat |
39306032 |
T |
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| Q |
301 |
cttagtttcatctc |
314 |
Q |
| |
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|||| ||||||||| |
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| T |
39306033 |
cttattttcatctc |
39306046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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