View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11328_high_11 (Length: 313)
Name: NF11328_high_11
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11328_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 41765486 - 41765749
Alignment:
| Q |
23 |
gaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgt |
122 |
Q |
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| T |
41765486 |
gaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgt |
41765585 |
T |
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| Q |
123 |
tctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttc |
222 |
Q |
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| T |
41765586 |
tctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaagttt |
41765685 |
T |
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| Q |
223 |
tgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
286 |
Q |
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| T |
41765686 |
tgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 55 - 286
Target Start/End: Original strand, 41757435 - 41757666
Alignment:
| Q |
55 |
ccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaag |
154 |
Q |
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| T |
41757435 |
ccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaag |
41757534 |
T |
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| Q |
155 |
atattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaag |
254 |
Q |
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| T |
41757535 |
atcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaag |
41757634 |
T |
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| Q |
255 |
tccaagagtggtggaagcaatatacacaggtt |
286 |
Q |
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| T |
41757635 |
tccaagagtggtggaagcaatatacacaggtt |
41757666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
164 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
260 |
Q |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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