View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11328_high_14 (Length: 304)

Name: NF11328_high_14
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11328_high_14
NF11328_high_14
[»] chr5 (3 HSPs)
chr5 (43-304)||(10239281-10239542)
chr5 (46-304)||(10230504-10230762)
chr5 (43-235)||(10255132-10255324)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 43 - 304
Target Start/End: Original strand, 10239281 - 10239542
Alignment:
Q  43 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10239281 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgta 10239380  T
Q  143 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10239381 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggat 10239480  T
Q  243 tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10239481 tatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 10239542  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 10230504 - 10230762
Alignment:
Q  46 tgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgtaact 145  Q
    |||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| | |    
T  10230504 tgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagt 10230603  T
Q  146 ttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattat 245  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||  ||| ||||    
T  10230604 ttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttat 10230703  T
Q  246 actgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagc 304  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  10230704 actgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagc 10230762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 10255324 - 10255132
Alignment:
Q  43 acctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtgta 142  Q
    ||||||||||  ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||    
T  10255324 acctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgta 10255225  T
Q  143 actttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta 235  Q
    |  |||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||   || ||||||||||||    
T  10255224 agattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta 10255132  T

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