View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11328_high_3 (Length: 407)
Name: NF11328_high_3
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11328_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 35 - 362
Target Start/End: Original strand, 42122065 - 42122392
Alignment:
| Q |
35 |
agaacctgtgcagatcagttaatttcaaagatgtaattgcattaattaaattagaacatgaaataatttacctgagctaagacccatccaataagccaat |
134 |
Q |
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| T |
42122065 |
agaacctgcacagatcagttaatttcaaagatgtaattgcattaattaaattagaacatgaaataatttacctgagctaagacccatccaataagccaat |
42122164 |
T |
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| Q |
135 |
caatatcacacttgaggttgcatatcagaagtgcatttttctttacctaaatctctcttaaataaaaatggaaagttgtgagagtgagatcatgtagcnn |
234 |
Q |
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| T |
42122165 |
caatatcacacttgaggttgcatatcagaagtgcatttttctttacctaaatctctcttaaataaaaatggaaagttgtgagagtgagatcatgtagcaa |
42122264 |
T |
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| Q |
235 |
nnnnnngatatatatataagaacttcaacttaataacaaccaagtgaccgtcaccttaattaccagctaattcaaaagcttctgaat----ctgcgtata |
330 |
Q |
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| T |
42122265 |
aaa----aaagatatataagaacttcaacttaataacaaccaagtgaccgtcaccttaattaccagctaattcaaaagcttctgaatctgcctgcgtata |
42122360 |
T |
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| Q |
331 |
gttcaatctgcaacactaagatcattcaatta |
362 |
Q |
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| T |
42122361 |
gttcaatctgcaacactaagatcattcaatta |
42122392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 41863069 - 41862991
Alignment:
| Q |
103 |
tacctgagctaagacccatccaataagccaatcaatatcacacttgaggttgcatatcagaagtgcatttttctttacct |
182 |
Q |
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| T |
41863069 |
tacctgagccaagacccatccaataagccaatcaatgtcactcctgtgattgcatatcagaagtgca-ttttctttacct |
41862991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 36553020 - 36552981
Alignment:
| Q |
104 |
acctgagctaagacccatccaataagccaatcaatatcac |
143 |
Q |
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| T |
36553020 |
acctgagctaaaacccatccaacaagccaatcaatatcac |
36552981 |
T |
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