View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11328_high_5 (Length: 360)
Name: NF11328_high_5
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11328_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 11119335 - 11119678
Alignment:
| Q |
1 |
attagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaatcaatggagggggatatggttagttcaatct |
100 |
Q |
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| T |
11119335 |
attagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaatcaatggagggggatatggttagttcaatct |
11119434 |
T |
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| Q |
101 |
aaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgt |
200 |
Q |
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| T |
11119435 |
aaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgt |
11119534 |
T |
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| Q |
201 |
tatgtgctttatgtgtgcaagataaccttcnnnnnnnctaagtaattttc-----attatagtatatcctctctttccgtcacaagttatgtctgtgnnn |
295 |
Q |
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| T |
11119535 |
tatgtgctttatgtgtgcaagataatcttttttttttctaagtaattttcattatattatagtatatcctctctttccgtcacaagttatgtctttgttt |
11119634 |
T |
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| Q |
296 |
nnnncaacattccccattattagataatcatcctcttgcatcca |
339 |
Q |
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| T |
11119635 |
ttttcaacatttcccattattagatgatcatcctcttgcatcca |
11119678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11111564 - 11111797
Alignment:
| Q |
1 |
attagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctc---agaatcaatggagggggatatggttagttcaa |
97 |
Q |
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| T |
11111564 |
attagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctgcagaatcaatggaaggggatatggttagttcaa |
11111663 |
T |
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| Q |
98 |
tctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatg---- |
193 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||| |||||| |||| | ||| | |
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| T |
11111664 |
tctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataaagagaagtgctggctaagcacatttgtgtcatgaggtata |
11111759 |
T |
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| Q |
194 |
-tgtatgttatgtgctttatgtgtgcaagataaccttc |
230 |
Q |
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||||| ||| ||| |||||||||| |||||||||||| |
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| T |
11111760 |
ctgtattttacgtgttttatgtgtgtaagataaccttc |
11111797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 10793218 - 10793121
Alignment:
| Q |
13 |
tgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgg---cctcagaatcaatggagggggatatggttagttcaatctaaatgaa |
107 |
Q |
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||||||||||||||||| ||||||||||| || |||||||| | ||| || |||||||| | || |||||||||||||||||||| |||||||| |
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| T |
10793218 |
tgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttgatggggatatggttagttcaatttaaatgaa |
10793121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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