View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11328_high_7 (Length: 341)

Name: NF11328_high_7
Description: NF11328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11328_high_7
NF11328_high_7
[»] chr3 (4 HSPs)
chr3 (15-265)||(5351915-5352164)
chr3 (15-142)||(5344897-5345024)
chr3 (92-136)||(5325075-5325119)
chr3 (84-142)||(5338089-5338147)
[»] chr7 (8 HSPs)
chr7 (256-312)||(39577595-39577651)
chr7 (259-312)||(39592072-39592125)
chr7 (256-311)||(39541732-39541787)
chr7 (256-312)||(39334772-39334828)
chr7 (256-312)||(39346036-39346092)
chr7 (256-312)||(39567779-39567835)
chr7 (256-311)||(39550989-39551044)
chr7 (256-313)||(39360580-39360637)
[»] chr8 (1 HSPs)
chr8 (39-131)||(14535283-14535375)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 5351915 - 5352164
Alignment:
Q  15 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351915 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 5352014  T
Q  115 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  5352015 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt 5352113  T
Q  215 tagaattttatttgcattgttgccttgtcctgtgttttatttgcaatgtta 265  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5352114 tagaattttatttgcattgttgccttgtcctgtgtttgatttacaatgtta 5352164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
Q  15 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 114  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||||| |||||||  |||  || | |||| |||||||||||||||||||| ||     
T  5344897 tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg 5344996  T
Q  115 caacttcaaggcaaaaattgaaacaact 142  Q
    ||||||||||||||||||||||||||||    
T  5344997 caacttcaaggcaaaaattgaaacaact 5345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
Q  92 tgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa 136  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  5325119 tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa 5325075  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 5338147 - 5338089
Alignment:
Q  84 agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact 142  Q
    ||||||| ||||||| |||| |||||||||||| ||||||||  ||| |||||||||||    
T  5338147 agttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact 5338089  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 39577651 - 39577595
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577651 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 39577595  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 39592125 - 39592072
Alignment:
Q  259 aatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 312  Q
    ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||    
T  39592125 aatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac 39592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 39541787 - 39541732
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 311  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  39541787 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaaaa 39541732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 39334772 - 39334828
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 312  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39334772 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39334828  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 39346036 - 39346092
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 312  Q
    ||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39346036 tgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39346092  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 39567835 - 39567779
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 312  Q
    |||||||||| ||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39567835 tgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac 39567779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 39551044 - 39550989
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 311  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||| || |||||||    
T  39551044 tgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa 39550989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 39360580 - 39360637
Alignment:
Q  256 tgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaact 313  Q
    ||||||| |||||| ||||||||| ||||||| ||||||  |||| ||||||||||||    
T  39360580 tgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaact 39360637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 14535375 - 14535283
Alignment:
Q  39 tgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa 131  Q
    ||||||||||||||||||| |||| || |||||||| ||| |   ||||||||| || ||| |||||||||| ||    ||||||||||||||    
T  14535375 tgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa 14535283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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