View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11329_high_5 (Length: 460)
Name: NF11329_high_5
Description: NF11329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11329_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 33459803 - 33460227
Alignment:
| Q |
19 |
aaagagagaatctaaaagccattatttaagcaatatagtctttactctcattaaatttcagacaccctgggatgttaataactcactactataaaagctg |
118 |
Q |
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| T |
33459803 |
aaagagagaatctaaaagccattatttaagcaatataatctttactctcattaaatttcagacaccctgggatgttaataactcactactataaaagctg |
33459902 |
T |
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| Q |
119 |
taaagatgcatgaatgaatgaataagtcttcttcaatattcacctgttttaactgcaattaatttaacattgataaataaagtatagtagttaatttcat |
218 |
Q |
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| T |
33459903 |
taaagatgcatga----atgaataagtcttcttcaatattcacctgttttaactgcaattaatttaacattgataaataaagtatagtagttaatttcat |
33459998 |
T |
|
| Q |
219 |
atcatagattgtcacgccagggagacagacagaaagaaatgttatgatatgatataaattgaatgtatagtaatattagagaaaggtgaatgtgtgttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33459999 |
atcatagattgtcacgccagggagacagacagaaagaaatgttatgatatgatataaattgaatgtatagtaatattagagaaaggtgaatgtgtgttta |
33460098 |
T |
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| Q |
319 |
tacggttaagggaaatgagtgtgatgtcattttctggtctctttcctcaggtacccgagtgatgcagataagcatctcttagcaagacagactggccttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33460099 |
tacggttaagggaaatgagtgtgatgtcattttctggtctctttcctcaggtacccgagtgatgcagataagcatctcttagcaagacagactggccttt |
33460198 |
T |
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| Q |
419 |
ccagaaatcaggttcgtcccctccactct |
447 |
Q |
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| T |
33460199 |
ccagaaatcaggttcgtcccctccactct |
33460227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 435
Target Start/End: Complemental strand, 7062074 - 7061953
Alignment:
| Q |
315 |
tttatacggttaagggaaatgagtgtgatgtcattttct---ggtctctttcctcaggtacccgagtgatgcagataagcatctcttagcaagacagact |
411 |
Q |
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|||||| ||||||||||| || | |||||||||||||| |||||||||| ||||||| || |||||||||||||||||||| || ||| |||| ||| |
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| T |
7062074 |
tttatatggttaagggaag-gactttgatgtcattttcttttggtctctttc-tcaggtatccaagtgatgcagataagcatctattggcacgacaaact |
7061977 |
T |
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| Q |
412 |
ggcctttccagaaatcaggttcgt |
435 |
Q |
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|| || || |||||||||||||| |
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| T |
7061976 |
gggctatcacgaaatcaggttcgt |
7061953 |
T |
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