View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11329_low_3 (Length: 579)
Name: NF11329_low_3
Description: NF11329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11329_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 228 - 414
Target Start/End: Complemental strand, 17657571 - 17657385
Alignment:
| Q |
228 |
aaagaatttaccaacacattcatggcaccagctttaaaatgatgtggttgctttggcctcttctctctagatatgtagatcaaatgtggcaatccatctt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17657571 |
aaagaatttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagatcaaatgtggcaatccatctt |
17657472 |
T |
|
| Q |
328 |
cagccatttccttgttctcccatataaccttataaattcatgatgtgagcattaatgttttgttagacatgttttcttttgttattt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17657471 |
cagccatttccttgttctcccatataaccttataaattcatgatgtgagcattaatgttttgttagacatgctttctcttgttattt |
17657385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 17657799 - 17657643
Alignment:
| Q |
1 |
gggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttacaaacatgtcacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17657799 |
gggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttacaaacatgtcacaa |
17657700 |
T |
|
| Q |
101 |
tccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctaaata |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17657699 |
tccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctgaata |
17657643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 37008829 - 37008901
Alignment:
| Q |
235 |
ttaccaacacattcatggcaccagctttaaaatgatgtggttgctttggcctcttctctctagatatgtagat |
307 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37008829 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
37008901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 37025743 - 37025894
Alignment:
| Q |
1 |
gggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttacaaacatgtcacaa |
100 |
Q |
| |
|
|||||||||| |||| || ||||| ||||||||||| || || | ||||||||||||||| || | | |||| || |||||||| || |||||||||| |
|
|
| T |
37025743 |
gggacattgaacaaatgcaacttccttttccccttttgaatctaacaaaatgcacaaggcgtgtagagcaatcttaggattgttcacgtgcatgtcacaa |
37025842 |
T |
|
| Q |
101 |
tccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtct |
152 |
Q |
| |
|
|| | |||||| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
37025843 |
tctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtct |
37025894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 37008562 - 37008712
Alignment:
| Q |
2 |
ggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttacaaacatgtcacaat |
101 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || || || | ||||||||| | |||||| | ||||| || | |||||| ||| |||||||||||| |
|
|
| T |
37008562 |
ggacattgagcaaatgcaacttctttttctccctttgaatccaacaaaatgcaaagggcatgtagtacaatcttagaattgttcacatacatgtcacaat |
37008661 |
T |
|
| Q |
102 |
ccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtct |
152 |
Q |
| |
|
| | ||| | ||| ||||| ||||| || ||||| |||||||||||||||| |
|
|
| T |
37008662 |
ctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtct |
37008712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 37044816 - 37044891
Alignment:
| Q |
77 |
ggattgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtct |
152 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||| || || |||||||| ||||| |||||||||||||||| |
|
|
| T |
37044816 |
ggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtct |
37044891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 37035558 - 37035633
Alignment:
| Q |
77 |
ggattgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtct |
152 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||| || || |||||||| ||||| || || |||||||||| |
|
|
| T |
37035558 |
ggattgttcacaaccatgtcacagtccacgttcaacataaaaggcgcattggtcatcaatcctgaaactcttgtct |
37035633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 37035761 - 37035808
Alignment:
| Q |
278 |
ctttggcctcttctctctagatatgtagatcaaatgtggcaatccatc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
37035761 |
ctttggcctcttctctctagatatgtagattaagtgaggcaatccatc |
37035808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 37045019 - 37045066
Alignment:
| Q |
278 |
ctttggcctcttctctctagatatgtagatcaaatgtggcaatccatc |
325 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
37045019 |
ctttggtctcttctctctggatatgtagattaaatgaggcaatccatc |
37045066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University