View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11329_low_4 (Length: 547)
Name: NF11329_low_4
Description: NF11329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11329_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 39 - 529
Target Start/End: Original strand, 34774458 - 34774948
Alignment:
| Q |
39 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774458 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
34774557 |
T |
|
| Q |
139 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774558 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctat |
34774657 |
T |
|
| Q |
239 |
gtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774658 |
gtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcc |
34774757 |
T |
|
| Q |
339 |
tctcccctccgcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774758 |
tctcccctccgcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagc |
34774857 |
T |
|
| Q |
439 |
aacctcacaatggagaaatagatgaattgatgattcgtccaccctttcacataaagcgcaacacgtaggggcctcaggtggaaggacgttt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774858 |
aacctcacaatggagaaatagatgaattgatgattcgtccaccctttcacataaagcgcaacacgtaggggcctcaggtggaaggacgttt |
34774948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 39 - 510
Target Start/End: Original strand, 42748646 - 42749115
Alignment:
| Q |
39 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
138 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| ||||| |||| | |||||| ||||||| | |||||| | | ||||||||||||| |
|
|
| T |
42748646 |
cctgcagaaaacagcagggaccaaattgaccacccctctccagcacaa--aaaacctgcaggcttccttaaatccttcgcaaaagacattcctttggatt |
42748743 |
T |
|
| Q |
139 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42748744 |
ccaacaccattcatagtacaaacacggcgatataagaatacgatccaaagaccaacgccacgatatcacctttatctcatccacaatctcgcccacctcc |
42748843 |
T |
|
| Q |
239 |
gtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcc |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42748844 |
gtaattcgattattaaatactcgattattcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcc |
42748943 |
T |
|
| Q |
339 |
tctcccctccgcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagc |
438 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
42748944 |
tctcccctccgctccaacactcccaaagaatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccacactctaccggc |
42749043 |
T |
|
| Q |
439 |
aacctcacaatggagaaatagatgaattgatgattcgtccaccctttcacataaagcgcaacacgtaggggc |
510 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42749044 |
aacctcacaatgaagaaaaagatgaattgaggatccgtccaccctttcacataaagcgcaacacgtaggggc |
42749115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 2 - 399
Target Start/End: Original strand, 35024304 - 35024697
Alignment:
| Q |
2 |
aaacagccagtaggcgaaaaaaccagaagnnnnnnnncctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35024304 |
aaacagccagtaggcgaaaaaaccagaa----aaaaacctgcagaaaacaccagggaccaaactgaccacccctctccaacataattaaaaccagcaggt |
35024399 |
T |
|
| Q |
102 |
caccttaaaccagtcgcaataaaaattcctttggattccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacga |
201 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
35024400 |
tgccttaaaccagtcgcaatagagattcctttggattccaacatcattcatagtacaaacacggcgacataaggatacgatccaaagaccaacgccacga |
35024499 |
T |
|
| Q |
202 |
taacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtagtatgc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35024500 |
taacacctttatctcatccacaatctcgcccacctccgtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtaatatgc |
35024599 |
T |
|
| Q |
302 |
caaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcct |
399 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35024600 |
caaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaaaggatgaagaagttagggggaattaacatcatcct |
35024697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 265 - 481
Target Start/End: Original strand, 12825478 - 12825695
Alignment:
| Q |
265 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa |
364 |
Q |
| |
|
|||||| |||||||| || ||| || |||||| ||||| |||||| ||||| || ||||| ||| |||||||||||| || || ||||||||||||||| |
|
|
| T |
12825478 |
attccttgctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
12825577 |
T |
|
| Q |
365 |
aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga |
463 |
Q |
| |
|
|| | ||| || ||||| |||||||| | | | ||||| || |||||| ||||| ||||| || || | |||||||||||||| |||||||||||| |
|
|
| T |
12825578 |
agaacgaataaattaggcggaattaaatgaaacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga |
12825677 |
T |
|
| Q |
464 |
attgatgattcgtccacc |
481 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
12825678 |
attgacgattcatccacc |
12825695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 249 - 498
Target Start/End: Complemental strand, 24189566 - 24189317
Alignment:
| Q |
249 |
tattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctcc |
348 |
Q |
| |
|
||||||| |||| ||||||||| || |||| |||||||| | ||| | |||||||||||| |||| || |||||| ||||||||||| ||| || || |
|
|
| T |
24189566 |
tattaaacactctattattcctcgcaatccacaacacccacaccgttgcatgccaaataagtcttaggcccttacgaattctcttattctgctcgccacc |
24189467 |
T |
|
| Q |
349 |
gcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaa |
448 |
Q |
| |
|
| ||||||||||||||| ||| |||||||| ||||||| | |||||||||| | ||| ||||| ||| ||||| || || || || || |||||| |
|
|
| T |
24189466 |
actccaacactcccaaagagcgaacaagttaggcagaattaagagaatcctctccccctaccgcataataccttgccacacccttcccgctacatcacaa |
24189367 |
T |
|
| Q |
449 |
tggagaaatagatgaattgatgattcgtccaccctttcacataaagcgca |
498 |
Q |
| |
|
|| ||||| || |||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
24189366 |
tgaagaaagaggtgaattgacgattcatccaccctctcacataaagcgca |
24189317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 269 - 480
Target Start/End: Complemental strand, 37035562 - 37035351
Alignment:
| Q |
269 |
ctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaagga |
368 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| | ||||| || | |||| | | |||| |||||||||| || | |||||||||||| | || |
|
|
| T |
37035562 |
ctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccctgacgaatacgcttaatcctctccccgccactccaacactcccataaga |
37035463 |
T |
|
| Q |
369 |
tgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatgaattga |
468 |
Q |
| |
|
|| || ||||| ||||||| || | |||||||||||||||||||| | | |||| || || || |||||||||||||||||||| |||||| |||| |
|
|
| T |
37035462 |
caaataaattaggcggaattacaataaacctctcccaccaccccataatatcacgccacacccttccggcaacctcacaatggagaaaaagatgagttga |
37035363 |
T |
|
| Q |
469 |
tgattcgtccac |
480 |
Q |
| |
|
||||| ||||| |
|
|
| T |
37035362 |
cgattcatccac |
37035351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 24189697 - 24189580
Alignment:
| Q |
106 |
ttaaaccagtcgcaataaaaattcctttggattccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataac |
205 |
Q |
| |
|
||||||||| ||||| | | ||||| |||| ||| |||||||||||||||| |||||| | ||| ||| | |||||||||||| |||||||| || |
|
|
| T |
24189697 |
ttaaaccagacgcaaaagacattcccttgggcaccagcaccattcatagtacatacacggaggcatagagattctatccaaagaccatcgccacgacaag |
24189598 |
T |
|
| Q |
206 |
acctttatctcatccaca |
223 |
Q |
| |
|
||||| || ||||||||| |
|
|
| T |
24189597 |
accttgatgtcatccaca |
24189580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 495
Target Start/End: Complemental strand, 28571679 - 28571536
Alignment:
| Q |
352 |
ccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatgg |
451 |
Q |
| |
|
||||||||||||| | | || || ||||| |||||||| | |||||||||||||||| ||||| ||| ||||| || ||||| || || |||||||| |
|
|
| T |
28571679 |
ccaacactcccaatgcacaaataaattaggcggaattaagagaatcctctcccaccaccgcataataccttgccacaccctacctgctacatcacaatga |
28571580 |
T |
|
| Q |
452 |
agaaatagatgaattgatgattcgtccaccctttcacataaagc |
495 |
Q |
| |
|
|| || || ||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
28571579 |
aggaaaaggtgagttgaggattcatccaccctttcacataaagc |
28571536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 363
Target Start/End: Complemental strand, 47820220 - 47820122
Alignment:
| Q |
265 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactccca |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||| | ||||| || |||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
47820220 |
attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactccca |
47820122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 37631565 - 37631661
Alignment:
| Q |
132 |
ttggattccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctc |
228 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||| ||||| | | | |||| ||||||||||||| | |||||| ||||| ||||||||||| |
|
|
| T |
37631565 |
ttggattccaagtccattcatagaataaacacggcgaaatatgaagcctagacaaaaaccaacgccacgacagcaccttaatctcttccacaatctc |
37631661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 25355732 - 25355704
Alignment:
| Q |
134 |
ggattccaacaccattcatagtacaaaca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25355732 |
ggattccaacaccattcatagtacaaaca |
25355704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 38553143 - 38553102
Alignment:
| Q |
265 |
attcctagctttccataacacccaaatcgtagtatgccaaat |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
38553143 |
attcctagctttccacaacacccaaatcgtagtgtgccaaat |
38553102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 21016729 - 21016781
Alignment:
| Q |
266 |
ttcctagctttccataacacccaaatcgtagtatgccaaataagccttaatcc |
318 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21016729 |
ttcctagccttccgcaacacccaaatcgttgtatgccaaataagcctcaatcc |
21016781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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