View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11329_low_7 (Length: 446)
Name: NF11329_low_7
Description: NF11329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11329_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Original strand, 7997902 - 7998322
Alignment:
| Q |
6 |
agaagcataggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattagctcgaacgaatctaattctaaaaacattggacaaatttgt |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
7997902 |
agaaacattggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattggctcaaacgaatctaattctaaaaacattggacaaatttgt |
7998001 |
T |
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| Q |
106 |
ttccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatgatttatgtggatgaaaatcaaaataagaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
7998002 |
ttccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatga-taatgtggatgaaaatcaaaataagaaaa |
7998100 |
T |
|
| Q |
206 |
gtaaatacatttatgagcttaaaaacagaatcaaggaagcaaggnnnnnnnnnnnntgaaattcagggtgtacacctaaagcaacctattataacttacc |
305 |
Q |
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| T |
7998101 |
ctaaatacatttatgagcttaaaaacagaatcaaggaagcaagg--aaaaaaaaaatgaaattcagggtgtacacctaaagcatcctattataacttacc |
7998198 |
T |
|
| Q |
306 |
attacattccctgagatttataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggttttgagattatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7998199 |
attacattccctgagatttataaactacaccaacagctactcccataaaaaaagatgctgccacagctccaaacacaccaacgatggttttgagattatt |
7998298 |
T |
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| Q |
406 |
cttgctttcttcgttagaaacttt |
429 |
Q |
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| T |
7998299 |
cttgctttcttcgttagaaacttt |
7998322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 7979644 - 7979751
Alignment:
| Q |
295 |
tataacttaccattacattccctgagatttataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggtt |
394 |
Q |
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||||||| |||||||||||| || |||||||||| |||| |||||||||||||||||||| || |||| |||||||||||||||||||| | || |
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| T |
7979644 |
tataactcaccattacattctcttagatttataagtcttgccaatagctactcccataacaaaagccgcagccatagctccaaacacaccaacgaagatt |
7979743 |
T |
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| Q |
395 |
ttgagatt |
402 |
Q |
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|||||||| |
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| T |
7979744 |
ttgagatt |
7979751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 7979048 - 7979122
Alignment:
| Q |
80 |
attctaaaaacattggacaaatttgtttccgagacggatgtaaataaagcctttaaatagagcatgaattagtcc |
154 |
Q |
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|||||||||| ||| || |||||||| | || |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
7979048 |
attctaaaaatatttgataaatttgtgtttgatacggatgtaaataaagccttctaatagaacatgaattagtcc |
7979122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 24224588 - 24224682
Alignment:
| Q |
321 |
atttataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggttttgagattattcttgctttct |
415 |
Q |
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||||||||||||| |||||| |||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24224588 |
atttataaactacgccaacaactactcacataataaaagctgctgtcacagctccaaacacatcaacgatggttttgagattattcttgctttct |
24224682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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