View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11330_high_2 (Length: 374)
Name: NF11330_high_2
Description: NF11330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11330_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 41036047 - 41035713
Alignment:
| Q |
18 |
atcaacttcagctccatcacgataatttttacagttcatagtcttcacaaattctatgtctgattattcaggccatttatagaggtttacgaaggttggc |
117 |
Q |
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| T |
41036047 |
atcaacttcagctccatcacgataatttttacagttcatagtcttcacaaattctacgtctgattattcaggccatttatagaggtttacgaaggttggc |
41035948 |
T |
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| Q |
118 |
ctaattggaataccattgttggtattgacagaattggatatgcaaacagaagccatggaatttgtgaaggattccaattcaagagcataattcactaaat |
217 |
Q |
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| T |
41035947 |
ctaattggaataccattgttggtattgacagaattggatatgcaaacagaagccatggaacttgtgaaggattccaattcaagagcataattcactaaat |
41035848 |
T |
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| Q |
218 |
agttgcactgcttgacagtgtaagagaggcatggaaaattttcatgtgaggctattatataacctaaatcttattcatcagagaaatatatatagtctga |
317 |
Q |
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| T |
41035847 |
agttgcactgcttgatagtgtaagagaggcatggaaaattttcatgtgaggctattatataacctaaatcttattcatcagagaaatatatatagtctga |
41035748 |
T |
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| Q |
318 |
ttgtgtgtattaaataattgtgaggggatgtgaca |
352 |
Q |
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| T |
41035747 |
ttgtgtgtattaaataagtgtgaggggatgtgaca |
41035713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 41030445 - 41030283
Alignment:
| Q |
18 |
atcaacttcagctccatcacgataatttttacagttcatagtcttcacaaattctatgtctgattattcaggccatttatagaggtttacgaaggttggc |
117 |
Q |
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|||||||||| ||| ||||||||||| || |||||||||||||||||||||||| ||||||| | ||||| || ||||||||| |||| |||| |
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| T |
41030445 |
atcaacttcaactctgtcacgataattgtttgagttcatagtcttcacaaattctacttctgattct---ggccacttgtagaggtttgtgaagtttggt |
41030349 |
T |
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| Q |
118 |
ctaattggaataccattgttggtattgacagaattggatatgcaaacagaagccatggaatttgtgaag |
186 |
Q |
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| T |
41030348 |
ctaatcggaata--att-ttgttattaacagaattggatatgcaaacagaggccatggaatttgtgaag |
41030283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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