View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11330_high_3 (Length: 369)
Name: NF11330_high_3
Description: NF11330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11330_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 55884617 - 55884277
Alignment:
| Q |
15 |
atcatcaacaatgaagaaattgaaattaaagagagagattgaaattgaaccttctcattatcgcgtttgttatcagaagaattagaannnnnnngaagga |
114 |
Q |
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| T |
55884617 |
atcatcaacaatgaagaaattgaaattaaagagagagattgaaattgaaccttctcattatcgcgtttgttatcagaagaattagaatttt---gaagga |
55884521 |
T |
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| Q |
115 |
gacggagaagatctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcagtcggaggtggtggttcagagta |
214 |
Q |
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| T |
55884520 |
gacggagaagatctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcggtcggaggtggtggttcagagta |
55884421 |
T |
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| Q |
215 |
aaccaccacctctgacgaagagcctcttcgaagccccttgggtttagaaacgcacacacctatttttacagattttgatgatacttcatttaaatggatt |
314 |
Q |
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| T |
55884420 |
aaccaccacctctgacgaagagcctcttcgaagccccttgggtttagaaacgcacacacctatttttacagattttgatgatacttcatttaaatggatt |
55884321 |
T |
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| Q |
315 |
gcgttgggatttttgattccgatcgacttcttctcctaattcat |
358 |
Q |
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| T |
55884320 |
gcgttgggatttttgattccgatcgacttcttctcctaattcat |
55884277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 282
Target Start/End: Complemental strand, 9616523 - 9616366
Alignment:
| Q |
125 |
atctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctcttagattcagtcggaggtggtggttcagagtaaaccaccacc |
224 |
Q |
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| T |
9616523 |
atctctagtattacgaacaatgtcgaaaggagtacgcggcttaggcttgaggaggctcttatattcagtcagaggtggtggatcagaataaactaccact |
9616424 |
T |
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| Q |
225 |
tctgacgaagagcctcttcgaagccccttgggtttagaaacgcacacacctattttta |
282 |
Q |
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| T |
9616423 |
tctaacgaagagcctactcgaaaccccttgggtttagaaacgcacacacctattttta |
9616366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 9616148 - 9616078
Alignment:
| Q |
271 |
cacctatttttacagattttgatgatacttcatttaaatggattgcgttgggatttttgattccgatcgac |
341 |
Q |
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| T |
9616148 |
cacctatttttactgattttgatgattcttcatttatatgtattgcgttgggattttttattccgatcgac |
9616078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 9616271 - 9616199
Alignment:
| Q |
111 |
aggagacggagaagatctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggctct |
183 |
Q |
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| T |
9616271 |
aggagacgaaaaagatctctaatattacaaacaatgtcgtaaggagtgcgaggcttaggcttgaagaggctct |
9616199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 9394175 - 9394115
Alignment:
| Q |
120 |
agaagatctctagtattacgaacaatgtcggaaggagtacggggcttaggcttgaagaggc |
180 |
Q |
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| T |
9394175 |
agaagatctctggtttgacgaacaatatcagtaggagtacgtggctttggcttgaagaggc |
9394115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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