View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11330_low_5 (Length: 294)
Name: NF11330_low_5
Description: NF11330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11330_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 39919001 - 39918735
Alignment:
| Q |
18 |
gaaaaaacaaacgaataattgaaattacaaaaacactgattgaatataggtatgcttgaaaagtgaaaagttaaaaccgtccttaccaatgtgaagctgt |
117 |
Q |
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| T |
39919001 |
gaaaaatcaaacgaataattgaaattacaaaaacactgattgaatataggtatgcttgaaaagtgaaaagttaaaaccgtccttaccaatgtgaagctgt |
39918902 |
T |
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| Q |
118 |
taccccaaagcaaaatacgcaaagattgccactaaaactgtgtcgaggggtatattaaacatactcacaaagagtagccatttttgttctattgtccaca |
217 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39918901 |
tcccccaaagcaaaatacgcaaagattgtcactaaaactgtgtcgaggggtatattaaagatactcacaaagagtagccatttttgttctattgtccaca |
39918802 |
T |
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| Q |
218 |
tttcaatgaagatatatattcaagccaccacatacttttttagtatcctaatatgcacatacctttgcttc |
288 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39918801 |
tttcaatgaag----atattcaagccaccacatacttttttagtatcctaatatgcacatacttttgcttc |
39918735 |
T |
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