View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11331_high_1 (Length: 549)
Name: NF11331_high_1
Description: NF11331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11331_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 45 - 539
Target Start/End: Complemental strand, 23674276 - 23673781
Alignment:
| Q |
45 |
aaagagggttgcccgagcgtgctgtcagtgttcttaggggatggttgtttgaacactttttgcatccgtaagtgtgttatttcagtcttattaatatctt |
144 |
Q |
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| T |
23674276 |
aaagagggttgcccgagcgtgctgtcagtgttcttaggggatggttgtttgaacactttttgcatccgtaagtgtgttatttcagtcttattaatatctt |
23674177 |
T |
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| Q |
145 |
atgaagcacaaacaccagcttgacactaatattagcatctgtcggacaccaaaatgtgctttcagtatgaa-ggtgttagtgcaatgtaatcaagatttt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
23674176 |
atgaagcacaaacaccagcttgacactaatattagcatctgtcggacaccaaaatgtgctttcagtatgaagggtgttagtgcaatgtaatgaagatttt |
23674077 |
T |
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| Q |
244 |
aaaattaaagtcatgtcacttccttaataacgtggagaattatggtcaaatatggatgatgc------------ggcctcaattaaggagacgtcgaatt |
331 |
Q |
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| T |
23674076 |
aaaattaaagtcatatcacttccttaataacgtggagaattatggtcaaatatggatgatgcggcctcaattaaggcctcaattaaggagacgtcaaatt |
23673977 |
T |
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| Q |
332 |
ttttgatggcgctgctagagcgcagctccatatgttctttttaaacccttctatcaagtcgcccttatactacaatatacacattgggcttttccctttt |
431 |
Q |
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| T |
23673976 |
ttttgatgtc------------tagctccatatattctttttaaacccttctatcaagtcgcccttatactgcaatatacacattgggcttttccctttt |
23673889 |
T |
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| Q |
432 |
tctatcatcatctgtagaaaaagttgaaataacgtcaccaaattcggtcactacttatatcacttagtgacgaaaattagaggcagattttatatttttc |
531 |
Q |
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| T |
23673888 |
tctatcatcatctgtagaaaaagttgaaataacgtcaccaaattcggtcactatttatatcacttagcgacgaaaattagaggcagattttatatttttc |
23673789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 6085424 - 6085362
Alignment:
| Q |
56 |
cccgagcgtgctgtcagtgttcttaggggatggttgtttgaacactttttgcatccgtaagtg |
118 |
Q |
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|||||||||||||| | ||||||||| | ||| | |||||||||||| |||||||||||||| |
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| T |
6085424 |
cccgagcgtgctgtgactgttcttagagcctggctctttgaacactttctgcatccgtaagtg |
6085362 |
T |
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