View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11331_high_4 (Length: 422)
Name: NF11331_high_4
Description: NF11331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11331_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 25679418 - 25679827
Alignment:
| Q |
13 |
taggtcgagataatgctttgcaagacctaagtttgacgtgtcaaaaatttgaaagcctaagtatggtctgcgacctgtcaaaagcttactgtttaggtcc |
112 |
Q |
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| T |
25679418 |
taggtcgagataatgctttataagacctaagtttgacgtgtcaaaaatttgaaagcctaagtctggtctgcgacctgtcaaaagcttactgtttaggtcc |
25679517 |
T |
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| Q |
113 |
aagactgactttttgaaagtctgttatgatcttgtagcctttgtaaaactttatttcataagtttaaataaactaacgaacaaataagtcaatgatatcc |
212 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25679518 |
aagattgactttttgaaaatctgttatgatcttgtagcctttttaaaactttatttcataattttaaataaactaacgaacaaataagtcaatgatatcc |
25679617 |
T |
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| Q |
213 |
aaaaaagcataaaccttctcagttaagaaaaagtctgatctgtcataggctaggttgtaggccccttgtaggactggtctattctcatccctaagttgac |
312 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25679618 |
aaaaaagtataaaccttctcagttaagaaaaagtctaatctgtcataggctaggttgtaggccccttgtaggactggtctattctcatccctgagttgac |
25679717 |
T |
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| Q |
313 |
atgagacgcctcacacccaataaacttcgagagcaagatgtcacccttgtgtgagccgcttggtagaccatcctagatgcctcacaccagagataggaaa |
412 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25679718 |
atgagacgactcacaaccaataaacttcgagagcaagatgtcacccttgtgtgagccgcttggtagaccatcctagatgcctcacaccagagataggaaa |
25679817 |
T |
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| Q |
413 |
aatccaaaac |
422 |
Q |
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| T |
25679818 |
aatccaaaac |
25679827 |
T |
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