View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11331_high_5 (Length: 325)

Name: NF11331_high_5
Description: NF11331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11331_high_5
NF11331_high_5
[»] chr1 (25 HSPs)
chr1 (193-310)||(18937744-18937861)
chr1 (4-141)||(18937281-18937419)
chr1 (28-141)||(41432749-41432866)
chr1 (65-141)||(41817286-41817362)
chr1 (29-96)||(12625856-12625923)
chr1 (31-96)||(52068169-52068235)
chr1 (65-141)||(2909136-2909212)
chr1 (69-137)||(7915535-7915603)
chr1 (65-141)||(36269761-36269837)
chr1 (65-141)||(36886887-36886963)
chr1 (65-141)||(37649603-37649679)
chr1 (65-141)||(39889645-39889721)
chr1 (31-141)||(5584488-5584599)
chr1 (65-96)||(28848821-28848852)
chr1 (29-108)||(41428014-41428093)
chr1 (65-96)||(51246595-51246626)
chr1 (65-95)||(50476556-50476586)
chr1 (21-141)||(34738289-34738410)
chr1 (65-130)||(51303174-51303239)
chr1 (65-141)||(896482-896558)
chr1 (65-141)||(23871450-23871526)
chr1 (65-141)||(27500002-27500078)
chr1 (31-110)||(29092069-29092149)
chr1 (65-141)||(42488614-42488690)
chr1 (65-141)||(47905676-47905752)
[»] chr3 (24 HSPs)
chr3 (28-141)||(32858810-32858924)
chr3 (31-87)||(7435656-7435712)
chr3 (29-141)||(29623218-29623330)
chr3 (65-141)||(53888505-53888581)
chr3 (31-141)||(33944627-33944738)
chr3 (28-96)||(1132957-1133026)
chr3 (28-96)||(49855840-49855909)
chr3 (63-96)||(52620857-52620890)
chr3 (29-96)||(33281738-33281806)
chr3 (65-141)||(47789433-47789509)
chr3 (65-141)||(51686524-51686600)
chr3 (71-141)||(27197276-27197346)
chr3 (31-96)||(38639572-38639638)
chr3 (65-141)||(3537226-3537300)
chr3 (28-96)||(21777668-21777737)
chr3 (28-96)||(24588315-24588384)
chr3 (29-141)||(35283068-35283181)
chr3 (65-110)||(50948224-50948269)
chr3 (31-95)||(53664632-53664697)
chr3 (28-96)||(7302066-7302133)
chr3 (65-141)||(41961964-41962040)
chr3 (65-97)||(44400727-44400759)
chr3 (65-141)||(47714660-47714736)
chr3 (52-96)||(49183700-49183744)
[»] chr8 (15 HSPs)
chr8 (29-135)||(44879528-44879634)
chr8 (29-135)||(44880287-44880393)
chr8 (28-136)||(40985066-40985175)
chr8 (28-95)||(3393963-3394030)
chr8 (65-147)||(31297329-31297411)
chr8 (71-141)||(43239693-43239763)
chr8 (29-141)||(1839807-1839920)
chr8 (65-141)||(1942040-1942116)
chr8 (65-141)||(13865079-13865155)
chr8 (29-141)||(27085330-27085442)
chr8 (30-141)||(43733107-43733219)
chr8 (31-141)||(21173845-21173956)
chr8 (29-141)||(39193912-39194025)
chr8 (29-96)||(10589785-10589853)
chr8 (65-141)||(36906205-36906281)
[»] chr2 (27 HSPs)
chr2 (29-141)||(21834922-21835035)
chr2 (30-141)||(567369-567480)
chr2 (37-141)||(13765926-13766030)
chr2 (31-141)||(11515027-11515138)
chr2 (42-141)||(11522167-11522266)
chr2 (31-141)||(26905787-26905898)
chr2 (52-139)||(35550147-35550234)
chr2 (29-94)||(4003409-4003475)
chr2 (71-141)||(28539413-28539483)
chr2 (65-141)||(4041982-4042058)
chr2 (65-141)||(39205035-39205111)
chr2 (28-96)||(39913236-39913304)
chr2 (65-141)||(44137153-44137229)
chr2 (65-136)||(26599241-26599312)
chr2 (29-95)||(30072095-30072161)
chr2 (31-141)||(37194250-37194361)
chr2 (31-141)||(43572531-43572642)
chr2 (31-96)||(1364816-1364882)
chr2 (31-141)||(9087452-9087562)
chr2 (29-134)||(16519083-16519189)
chr2 (32-96)||(34757589-34757654)
chr2 (71-135)||(1270695-1270759)
chr2 (65-141)||(18780402-18780478)
chr2 (65-141)||(18826213-18826289)
chr2 (65-141)||(25960597-25960673)
chr2 (31-110)||(40211986-40212066)
chr2 (65-141)||(43334825-43334901)
[»] chr7 (13 HSPs)
chr7 (65-137)||(2826238-2826310)
chr7 (29-141)||(4787990-4788101)
chr7 (31-89)||(44487356-44487415)
chr7 (29-133)||(32820227-32820330)
chr7 (29-96)||(31179999-31180065)
chr7 (29-96)||(42267039-42267106)
chr7 (37-140)||(42620340-42620443)
chr7 (42-96)||(31055369-31055423)
chr7 (65-110)||(16805585-16805630)
chr7 (63-96)||(33810244-33810277)
chr7 (20-92)||(38137913-38137986)
chr7 (31-99)||(43741688-43741757)
chr7 (65-93)||(44720107-44720135)
[»] chr6 (11 HSPs)
chr6 (66-138)||(15615686-15615758)
chr6 (29-96)||(26713844-26713912)
chr6 (31-147)||(33590310-33590425)
chr6 (31-141)||(32221986-32222096)
chr6 (28-96)||(13380520-13380590)
chr6 (28-94)||(24379617-24379684)
chr6 (31-96)||(32719408-32719474)
chr6 (65-141)||(5825350-5825426)
chr6 (65-141)||(12779532-12779607)
chr6 (65-141)||(26574382-26574458)
chr6 (65-141)||(31345358-31345433)
[»] chr4 (20 HSPs)
chr4 (31-141)||(30198758-30198869)
chr4 (31-110)||(28175482-28175562)
chr4 (65-141)||(38136821-38136897)
chr4 (31-141)||(12708821-12708932)
chr4 (52-139)||(15498783-15498870)
chr4 (66-141)||(24279933-24280008)
chr4 (65-139)||(42759640-42759714)
chr4 (65-141)||(7182178-7182254)
chr4 (65-141)||(16535709-16535785)
chr4 (29-96)||(9119818-9119885)
chr4 (65-95)||(3127044-3127074)
chr4 (31-96)||(29114265-29114331)
chr4 (31-96)||(49668136-49668202)
chr4 (29-81)||(516045-516098)
chr4 (63-96)||(21296137-21296170)
chr4 (29-141)||(42650617-42650730)
chr4 (63-96)||(48830846-48830879)
chr4 (65-141)||(20533945-20534021)
chr4 (69-141)||(32648991-32649063)
chr4 (65-141)||(41363799-41363875)
[»] chr5 (15 HSPs)
chr5 (29-141)||(29022600-29022711)
chr5 (65-141)||(41694995-41695071)
chr5 (29-96)||(3925813-3925880)
chr5 (31-139)||(13569346-13569455)
chr5 (28-135)||(6491164-6491272)
chr5 (28-96)||(19389850-19389918)
chr5 (70-141)||(1935094-1935165)
chr5 (66-141)||(17092916-17092991)
chr5 (31-96)||(10437969-10438035)
chr5 (30-95)||(37508424-37508490)
chr5 (29-94)||(43496895-43496960)
chr5 (65-141)||(2020998-2021074)
chr5 (65-141)||(26149621-26149697)
chr5 (65-141)||(27480159-27480235)
chr5 (31-110)||(39649554-39649634)
[»] scaffold0248 (1 HSPs)
scaffold0248 (65-141)||(183-259)
[»] scaffold0028 (1 HSPs)
scaffold0028 (37-141)||(35442-35546)
[»] scaffold0274 (1 HSPs)
scaffold0274 (29-108)||(15899-15978)
[»] scaffold0031 (1 HSPs)
scaffold0031 (31-96)||(93538-93604)
[»] scaffold0136 (1 HSPs)
scaffold0136 (31-141)||(2010-2121)
[»] scaffold0119 (2 HSPs)
scaffold0119 (71-141)||(37145-37215)
scaffold0119 (71-135)||(30478-30542)
[»] scaffold0128 (1 HSPs)
scaffold0128 (31-141)||(26362-26474)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 18937744 - 18937861
Alignment:
Q  193 tttggaccttactactaatgcaaatgagaacatgggttcaagagaatgctgatgcagacataagtaagagccctccaaaactggggcatatataacacaa 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18937744 tttggaacttactactaatgcaaatgagaacatgggttcaagagaatgctgatgcagacataagtaagagccctccaaaactggggcatatataacacaa 18937843  T
Q  293 gttttatatggcatagta 310  Q
    ||||||||||||||||||    
T  18937844 gttttatatggcatagta 18937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 18937281 - 18937419
Alignment:
Q  4 gaaggggagagatttaaggaggtccatttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg-tggaat 102  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||    
T  18937281 gaaggagagagatttaagggggttcatttttcttcattatataaaattctcctcacatagagaactcaaaaattgtattggaggaggattttgatgaaat 18937380  T
Q  103 tttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  18937381 tttggaagtttttaataaattcatcaaatttaatctatg 18937419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 41432866 - 41432749
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaatt----ttggaggtttttaatgaatt 123  Q
    ||||||||||||| ||||||||  |||||||| | | | |||||||| ||||||||||||||||||||| ||  ||    ||||||| |||  |||||||    
T  41432866 catttttcttcataatataaaaccctcctcatttgggggactcaaaatttgtattggaggagggttttggggggttttggttggagggtttacatgaatt 41432767  T
Q  124 catcaaatttaatctatg 141  Q
    | ||||||||||||||||    
T  41432766 cttcaaatttaatctatg 41432749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 41817362 - 41817286
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||| ||   | |||||| ||||||||||| ||||    
T  41817362 gaactaaaaaattgtattggaggagggttttggggagttttggagggttaataagaattcttcaaatttaatttatg 41817286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 12625923 - 12625856
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||  |||||||| ||||||||| | ||||||| |||| |||||||||||||| ||||||    
T  12625923 atttttcttcaaaatataaaaatctcctcatttggagaactaaaaacttgtattggaggagagttttg 12625856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 52068235 - 52068169
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| |||| ||||||||| | ||| |||| ||||||||||||||||||||||||||    
T  52068235 ttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattggaggagggttttg 52068169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 2909136 - 2909212
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||| ||||||||||| ||||    
T  2909136 gaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttcaaatttaatttatg 2909212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 7915535 - 7915603
Alignment:
Q  69 tcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatc 137  Q
    |||||||||||||||||||||||||||| |   || |||||| |||  |||||||| ||||||||||||    
T  7915535 tcaaaaattgtattggaggagggttttgggaggttctggagggtttacatgaattcttcaaatttaatc 7915603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 36269761 - 36269837
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| ||||||||||||||||||| |||| | ||  ||||||||| |||  |||||||| ||||||| ||||||||    
T  36269761 gaactaaaaaattgtattggaggagagtttcggggggttttggaggatttatatgaattcttcaaattcaatctatg 36269837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 36886887 - 36886963
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||| ||||||||||||||||  ||  ||||||||| |||  |||||||  ||||||||||||||||    
T  36886887 gaactaaaaaattgcattggaggagggtttttgggggttttggagggtttatatgaatttttcaaatttaatctatg 36886963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 37649679 - 37649603
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||  ||| ||||||||| ||   | |||||| ||||||||||| ||||    
T  37649679 gaactaaaaaattgtattggaggagggtttttgggagttttggagggttaataagaattcttcaaatttaatttatg 37649603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 39889721 - 39889645
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  39889721 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 39889645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 5584488 - 5584599
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||  ||| ||||| ||   | |||||| ||||    
T  5584488 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggtttttgggagggttaataagaattcttcaa 5584587  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  5584588 atttaatttatg 5584599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 28848852 - 28848821
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||||||||||||||||||||||    
T  28848852 gaactcaaaaattgtattggaggagggttttg 28848821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 41428093 - 41428014
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttgga 108  Q
    |||||||||||| ||  || | ||||||||| | | ||||||||||||| |||||||||||| ||||| || ||||||||    
T  41428093 atttttcttcataatgaaagaatctcctcatttggggaactcaaaaattatattggaggaggattttgggggattttgga 41428014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 51246626 - 51246595
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||||||||||||||||||||||    
T  51246626 gaactcaaaaattgtattggaggagggttttg 51246595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 95
Target Start/End: Original strand, 50476556 - 50476586
Alignment:
Q  65 gaactcaaaaattgtattggaggagggtttt 95  Q
    |||||||||||||||||||||||||||||||    
T  50476556 gaactcaaaaattgtattggaggagggtttt 50476586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 34738289 - 34738410
Alignment:
Q  21 ggaggtccatttttcttcattatataaaattctcctcatata-gagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatg 119  Q
    |||||| ||||||||||||| ||| ||||| ||| |||| || | ||||||| || ||  ||||||||||| ||||  |||  |||||||| |||  |||    
T  34738289 ggaggttcatttttcttcataatacaaaatcctcttcatttaagggaactcataagtttgattggaggaggattttagggagctttggaggatttatatg 34738388  T
Q  120 aattcatcaaatttaatctatg 141  Q
    ||||| | ||||||||||||||    
T  34738389 aattctttaaatttaatctatg 34738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 51303239 - 51303174
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaa 130  Q
    |||||||||||||| ||| ||||||||||||| ||  ||||||||| |||  |||||||| |||||    
T  51303239 gaactcaaaaattgcatttgaggagggttttgaggggttttggaggatttatatgaattcttcaaa 51303174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 896558 - 896482
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||  ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  896558 gaactcaaaaattgtattgtgggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 23871526 - 23871450
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  ||  ||||| |||  |||||||  ||||||| ||||||||    
T  23871526 gaactcaaaaattgtattggcggagggttttggggggttacggagggtttatatgaatttttcaaattcaatctatg 23871450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 27500002 - 27500078
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||| || ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  27500002 gaactcaaaaattgtatcgggggagggttttggggggttatggaggatttatatgaatttttcaaattcaatctatg 27500078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 29092069 - 29092149
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||| |||||| ||  |||||||||    
T  29092069 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagagttttggggggttttggagg 29092149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 42488690 - 42488614
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||| || ||||||||||||||  || | |||| |||  |||||||  ||||||| ||||||||    
T  42488690 gaactcaaaaattgtatcgggggagggttttgtggggttattgagggtttatatgaatttttcaaattcaatctatg 42488614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 47905752 - 47905676
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||  ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  47905752 gaactcaaaaattgtattgggggagggtttttgggggttatggagggtttatatgaatttttcaaattcaatctatg 47905676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 32858810 - 32858924
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcat 126  Q
    ||||||||||||| ||||||||| |||||||| | | | ||||||||||||||||| |||||| |||||| ||  ||||||||| |||  ||||||||||    
T  32858810 catttttcttcataatataaaatcctcctcatttgggggaactcaaaaattgtattcgaggagagttttggggggttttggagggtttacatgaattcat 32858909  T
Q  127 caaatttaatctatg 141  Q
    |||||||||||||||    
T  32858910 caaatttaatctatg 32858924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 7435712 - 7435656
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggagg 87  Q
    |||||||||| ||||||||| |||||||| | ||||||| |||||||||||||||||    
T  7435712 ttttcttcataatataaaatcctcctcatctggagaactaaaaaattgtattggagg 7435656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 29623218 - 29623330
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||||| ||| ||||  |||||||| | |  ||||||||| |||||||| |||||||||||| ||  ||| ||||| |||  |||||||| |||    
T  29623218 atttttcttcataatacaaaaccctcctcatttgggaaactcaaaagttgtattgcaggagggttttgaggggtttaggagggtttatatgaattcttca 29623317  T
Q  129 aatttaatctatg 141  Q
    |||||||| ||||    
T  29623318 aatttaatatatg 29623330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 53888505 - 53888581
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||| ||  ||| ||||| |||  |||||||| ||||||||||| ||||    
T  53888505 gaactaaaaaattgtattggaggagggttttggggggtttgggagggtttatatgaattcttcaaatttaatatatg 53888581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 33944738 - 33944627
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||| ||||    
T  33944738 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttcaa 33944639  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  33944638 atttaatttatg 33944627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 1133026 - 1132957
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||| |||||| ||| |||| ||||||||| | | | |||||||||||||||||||||||||||||||    
T  1133026 cattttacttcataatacaaaactctcctcattttggggaactcaaaaattgtattggaggagggttttg 1132957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 49855909 - 49855840
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||| ||| |||||  | ||||| ||||| |||||||||||||||||| ||||||||||||    
T  49855909 catttttcttcataatacaaaataattctcatttagaggaactcaaaaattgtattgaaggagggttttg 49855840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 52620890 - 52620857
Alignment:
Q  63 gagaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||||||||||||||||||||||||    
T  52620890 gagaactcaaaaattgtattggaggagggttttg 52620857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 33281806 - 33281738
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||| ||||| ||||||||| |||||||| || || |||||||||||||||||||| |||| |||||    
T  33281806 attttttttcataatataaaatcctcctcatttataggaactcaaaaattgtattggaagaggattttg 33281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 47789509 - 47789433
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  47789509 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 47789433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 51686524 - 51686600
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||  ||  ||||||||| |||  |||||||  ||||||||||| ||||    
T  51686524 gaactaaaaaattgtattggaggagggtttttgggggttttggagggtttatatgaatttttcaaatttaatttatg 51686600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 27197276 - 27197346
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||| |||||||||| ||  |||| |||| |||  |||||||| ||||||||||| ||||    
T  27197276 aaaaattgtattggatgagggttttggggtttttttgagggtttatatgaattcttcaaatttaatttatg 27197346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 38639572 - 38639638
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  38639572 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 38639638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3537226 - 3537300
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| ||||||||||||||||||| |||||| ||  |||| |||| | |  |||||||| ||||||||||||||||    
T  3537226 gaactaaaaaattgtattggaggagagttttgggggtttttagagggtat--atgaattcttcaaatttaatctatg 3537300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 21777737 - 21777668
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatag-agaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||| ||| |||| |||| |||| | | |||| ||||||||||||||||||||| ||||||    
T  21777737 catttttcttcataatacaaaactctcatcatttgggagaaatcaaaaattgtattggaggagagttttg 21777668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 24588384 - 24588315
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||| ||| ||||| | |||||| | ||| ||||||||||||||||||| ||| |||||||    
T  24588384 catttttcttcataatacaaaatccccctcatttggaggaactcaaaaattgtattgggggatggttttg 24588315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 35283068 - 35283181
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||  ||||||||  |||||||| | | | |||| |||||||||||||||||| ||||||| ||  ||| ||||| |||  |||||||| ||    
T  35283068 atttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattgtattggaggaaggttttgaggggtttgggagggtttatatgaattcttc 35283167  T
Q  128 aaatttaatctatg 141  Q
    | ||||||| ||||    
T  35283168 atatttaatatatg 35283181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 50948224 - 50948269
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    ||||| |||||||||||||||||||||||||  | |||||||||||    
T  50948224 gaactaaaaaattgtattggaggagggtttttggaaattttggagg 50948269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 53664697 - 53664632
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggtttt 95  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||    
T  53664697 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggtttt 53664632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 7302066 - 7302133
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||||  || ||||| || ||||| | ||||||||||||||||||||| | ||||||||||    
T  7302066 catttttcttcatagtacaaaatccttctcattt-gagaactcaaaaattgtattgaaagagggttttg 7302133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 41962040 - 41961964
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || || ||| |||  |||||||  ||||||| ||||||||    
T  41962040 gaactcaaaaattgtattgggggagggttttggggggttatgaagggtttatatgaatttttcaaattcaatctatg 41961964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 44400727 - 44400759
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgt 97  Q
    ||||| |||||||||||||||||||||||||||    
T  44400727 gaactaaaaaattgtattggaggagggttttgt 44400759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 47714736 - 47714660
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| |||||||||||  |  || |||||| |||  |||||||  ||||||| ||||||||    
T  47714736 gaactcaaaaattgtattgggggagggttttggagggttatggagggtttatatgaatttttcaaattcaatctatg 47714660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 49183700 - 49183744
Alignment:
Q  52 ctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||| | ||||||| |||||||||||| |||||||||||||    
T  49183700 ctcctcatttggagaactaaaaaattgtattagaggagggttttg 49183744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 44879528 - 44879634
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||||| ||  |||||||||||||| ||| ||||| |||||||||||||||||| ||||||| || |||||||||| |||  |||||||| | |    
T  44879528 atttttcttcatgattcaaaattctcctcatttagggaactaaaaaattgtattggaggaaggttttgagggattttggagggtttacatgaattcttta 44879627  T
Q  129 aatttaa 135  Q
    |||||||    
T  44879628 aatttaa 44879634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 44880393 - 44880287
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||||| ||  |||||||||||||| ||| ||||| |||||||||||||||||| ||||||| || |||||||||| |||  |||||||| | |    
T  44880393 atttttcttcatgattcaaaattctcctcatttagggaactaaaaaattgtattggaggaaggttttgagggattttggagggtttacatgaattcttta 44880294  T
Q  129 aatttaa 135  Q
    |||||||    
T  44880293 aatttaa 44880287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 40985175 - 40985066
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcat 126  Q
    ||||||| ||||| ||| ||||| |||||||| | | | ||||||||||||||||||||||||||||||| ||  ||||||||| |||  |||||||| |    
T  40985175 catttttattcataatacaaaatcctcctcatttgggggaactcaaaaattgtattggaggagggttttgaggggttttggagggtttacatgaattctt 40985076  T
Q  127 caaatttaat 136  Q
    ||||||||||    
T  40985075 caaatttaat 40985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 3393963 - 3394030
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggtttt 95  Q
    |||||||||| || ||| ||||| |||||||| ||||||||||||||||| ||||||||||| |||||    
T  3393963 catttttctttataatacaaaatcctcctcatttagagaactcaaaaattatattggaggagagtttt 3394030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 31297411 - 31297329
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatgatatta 147  Q
    ||||| |||||||||||||||||||||||||| ||  || |||||| |||  |||||||  ||||||| |||||||| |||||    
T  31297411 gaactaaaaaattgtattggaggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatgttatta 31297329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 43239693 - 43239763
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||| |||| ||||| || |||||| ||| |||  |||||||| ||||||||||||||||    
T  43239693 aaaaattgtattggatgaggtttttgagggattttgaagggtttatatgaattcttcaaatttaatctatg 43239763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 1839920 - 1839807
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||  ||||||||  |||||||| | | | |||| |||||||||||||||||||||||||| ||  |||  |||| |||  |||||||| ||    
T  1839920 atttttcttcaaaatataaaaccctcctcatttgggggaacttaaaaattgtattggaggagggttttggggggtttaagagggtttatatgaattcttc 1839821  T
Q  128 aaatttaatctatg 141  Q
    ||||||||| ||||    
T  1839820 aaatttaatatatg 1839807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 1942116 - 1942040
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  1942116 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 1942040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 13865155 - 13865079
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || || ||| |||  |||||||  ||||||||||||||||    
T  13865155 gaactcaaaaattgtattgggggagggttttggggggttatgaagggtttatatgaatttttcaaatttaatctatg 13865079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 27085330 - 27085442
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    ||||||||| |  |||||||| ||| ||||| | | ||||| |||||||||||||||||| ||||||  ||  ||| ||||| |||  |||||||| |||    
T  27085330 atttttctttaaaatataaaactcttctcatttggggaactaaaaaattgtattggaggatggttttaaggggtttgggagggtttatatgaattcttca 27085429  T
Q  129 aatttaatctatg 141  Q
    |||||||| ||||    
T  27085430 aatttaatatatg 27085442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 43733219 - 43733107
Alignment:
Q  30 tttttcttcattatataaaattctcctcatat-agagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    ||||| ||||| ||| ||||| |||||||| | || ||| | |||||||||||||||||||||||||  ||| ||||||||| |||  |||||||  | |    
T  43733219 tttttattcataatacaaaatcctcctcatttgagggaattaaaaaattgtattggaggagggtttttgggagttttggaggatttatatgaatttttaa 43733120  T
Q  129 aatttaatctatg 141  Q
    |||| ||||||||    
T  43733119 aattcaatctatg 43733107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 21173956 - 21173845
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||| |||||||||||||||||| ||  ||||||||| ||   | |||||| ||||    
T  21173956 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattatattggaggagggttttggggggttttggagggttaataagaattcttcaa 21173857  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  21173856 atttaatttatg 21173845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 39193912 - 39194025
Alignment:
Q  29 atttttcttcattatataaaattctcctcatat-agagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||| ||||||||  ||| |||| |  | ||||| |||| ||||||||||||||||||||  ||  ||||| ||| |||  |||||||| ||    
T  39193912 atttttcttcataatataaaaccctcttcatttgggggaactaaaaagttgtattggaggagggtttttgggggttttgaagggtttatatgaattcttc 39194011  T
Q  128 aaatttaatctatg 141  Q
    ||||||| ||||||    
T  39194012 aaatttattctatg 39194025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 10589785 - 10589853
Alignment:
Q  29 atttttcttcattatataaaattctcctcatataga-gaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||  |||||||||  | ||||| |||| ||||| |||||||||||||||||||| |||||    
T  10589785 atttttcttcaaaatataaaatcattctcatttagaagaactaaaaaattgtattggaggaggattttg 10589853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 36906205 - 36906281
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||  ||||||||    
T  36906205 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaatccaatctatg 36906281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 21834922 - 21835035
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||| |||||||| ||||||||| ||| | |||| |||| ||||||| ||||||||||||| | | ||||||||| |||  ||||||| |||    
T  21834922 atttttcttcataatataaaactctcctcatttaggggaactaaaaagttgtattagaggagggttttgggcagttttggagggtttatatgaattaatc 21835021  T
Q  128 aaatttaatctatg 141  Q
    ||||||||| ||||    
T  21835022 aaatttaatatatg 21835035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 567369 - 567480
Alignment:
Q  30 tttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtgga-attttggaggtttttaatgaattcatca 128  Q
    ||||||||||   ||||||| ||||||||| ||| |||||||||||||||||| |||||  ||||| ||||  ||||||||| |||  |||||||| |||    
T  567369 tttttcttcaaattataaaactctcctcatttagggaactcaaaaattgtattagaggaaagtttt-tggaggttttggagggtttacatgaattcttca 567467  T
Q  129 aatttaatctatg 141  Q
    |||||||||||||    
T  567468 aatttaatctatg 567480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 13766030 - 13765926
Alignment:
Q  37 tcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaat 136  Q
    |||| ||| ||||||| |||||| | | |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| |||    
T  13766030 tcataataaaaaattcccctcatttggggaactcaaaaattgtattgggggagggttttggggggttgtggagggtttatatgaatttttcaaattcaat 13765931  T
Q  137 ctatg 141  Q
    |||||    
T  13765930 ctatg 13765926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 11515027 - 11515138
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||| ||||    
T  11515027 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttcaa 11515126  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  11515127 atttaatttatg 11515138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 11522266 - 11522167
Alignment:
Q  42 atataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||  |||||||| | | ||||| |||| ||||||||||||||||||||| ||  ||| ||||| |||  |||||||| ||||||||||| ||||    
T  11522266 atataaaaccctcctcatttggggaactaaaaagttgtattggaggagggttttggggggtttgggagggtttatatgaattcttcaaatttaatatatg 11522167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 26905787 - 26905898
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||  ||||    
T  26905787 ttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaatttttcaa 26905886  T
Q  130 atttaatctatg 141  Q
    ||||||||||||    
T  26905887 atttaatctatg 26905898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 35550234 - 35550147
Alignment:
Q  52 ctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatcta 139  Q
    |||||||| | | ||||| |||| ||||| ||||| || ||||||||| |||||||||| |||  |||||||| ||||||||||||||    
T  35550234 ctcctcatttggggaactaaaaagttgtactggagtagagttttgtgggattttggagggtttatatgaattcttcaaatttaatcta 35550147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 4003409 - 4003475
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttt 94  Q
    |||||||||||| ||| |||| ||||||||| | | | |||||||||||||||||||||||||||||    
T  4003409 atttttcttcataatacaaaactctcctcatttgggggaactcaaaaattgtattggaggagggttt 4003475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 28539483 - 28539413
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||| ||| | |||| || |||||||||| |||  |||||||| ||||||||||||||||    
T  28539483 aaaaattgtattggatgagagctttgggggattttggagggtttatatgaattcttcaaatttaatctatg 28539413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 4041982 - 4042058
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  4041982 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 4042058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 39205035 - 39205111
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||| ||||  ||  ||||||||| |||  |||||||| | ||||||||||||||    
T  39205035 gaactaaaaaattgtattggaggaggattttaggggtttttggagggtttatatgaattcttgaaatttaatctatg 39205111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 39913236 - 39913304
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||| | |||||||  ||||||||| | | ||||||||||||| |||||||||||| |||||    
T  39913236 catttttcttcctgatataaatatctcctcatttggggaactcaaaaattatattggaggaggattttg 39913304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 44137153 - 44137229
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  44137153 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 44137229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 26599312 - 26599241
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaat 136  Q
    ||||||| |||||||||||||||||||||||| |   ||||||||| |||  |||| ||| |||||||||||    
T  26599312 gaactcacaaattgtattggaggagggttttgggaggttttggagggtttacatgagttcttcaaatttaat 26599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 30072161 - 30072095
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatag-agaactcaaaaattgtattggaggagggtttt 95  Q
    |||||||||||  ||||||||| |||||||| | | |||||| |||||||||||||||||||||||||    
T  30072161 atttttcttcaaaatataaaatcctcctcatttgggagaact-aaaaattgtattggaggagggtttt 30072095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 37194250 - 37194361
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||  ||  ||||||||| ||   | |||||| ||||    
T  37194250 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggtttttgggggttttggagggttaataagaattcttcaa 37194349  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  37194350 atttaatttatg 37194361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 43572642 - 43572531
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||| |||||| ||  ||||||||| ||   | |||||| ||||    
T  43572642 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagagttttggggggttttggagggttaataagaattcttcaa 43572543  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  43572542 atttaatttatg 43572531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 1364816 - 1364882
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  1364816 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 1364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 9087562 - 9087452
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaa 130  Q
    |||||||||  ||||||||  |||||||| | | ||||| ||||||||||| |||||||| ||||| ||  ||| ||||  |||  |||||||| |||||    
T  9087562 ttttcttcaaaatataaaaccctcctcatttggggaactgaaaaattgtatcggaggaggattttggggggtttgggagagtttatatgaattcttcaaa 9087463  T
Q  131 tttaatctatg 141  Q
    |||||| ||||    
T  9087462 tttaatatatg 9087452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 16519189 - 16519083
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaa-ctcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||| ||| ||||| |||||||| | | ||| || |||| ||||||| ||||||||| ||| ||  |||| |||| |||  |||||||||||    
T  16519189 atttttcttcataatacaaaatcctcctcatttggggaaactaaaaagttgtattagaggagggtattggggggtttttgagggtttatatgaattcatc 16519090  T
Q  128 aaattta 134  Q
    |||||||    
T  16519089 aaattta 16519083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 34757589 - 34757654
Alignment:
Q  32 tttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  34757589 tttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 34757654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 1270759 - 1270695
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaa 135  Q
    ||||||||||||| | |||||||||| |  |||||||||| |||  |||||||| ||||||||||    
T  1270759 aaaaattgtattgaatgagggttttgagagattttggagggtttatatgaattcttcaaatttaa 1270695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 18780402 - 18780478
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||||||  |||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  18780402 gaactcaaaaattgtattgggagagggttttggggggttatggaggatttatatgaatttttcaaattcaatctatg 18780478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 18826289 - 18826213
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||| ||||    
T  18826289 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatttatg 18826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 25960673 - 25960597
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||| || ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  25960673 gaactcaaaaattgtatcgggggagggttttgagggcttatggagggtttatatgaatttttcaaattcaatctatg 25960597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 40211986 - 40212066
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||| |||||||||| ||  |||||||||    
T  40211986 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatgagggttttggggggttttggagg 40212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 43334825 - 43334901
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| |   || |||||| |||  |||||||  ||||||| ||||||||    
T  43334825 gaactcaaaaattgtattgggggagggttttgagaggttatggagggtttatatgaatttttcaaattcaatctatg 43334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 2826310 - 2826238
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatc 137  Q
    ||||| |||||||||||||||||||||||||| || |||||||| | |||  |||||||| ||||||||||||    
T  2826310 gaactaaaaaattgtattggaggagggttttgggggattttggaagctttatatgaattcttcaaatttaatc 2826238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 4788101 - 4787990
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||||| |||||||||  |||| || | | ||||| |||||||||||||||| ||||||||| || |||| |||||  |||||||||||  |||    
T  4788101 atttttcttcataatataaaatcatccttatttggggaactaaaaaattgtattggagtagggttttgagggatttgggagg-gtttaatgaatttttca 4788003  T
Q  129 aatttaatctatg 141  Q
    | |||||| ||||    
T  4788002 attttaatatatg 4787990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 44487415 - 44487356
Alignment:
Q  31 ttttcttcattatataaaattctcctcatataga-gaactcaaaaattgtattggaggag 89  Q
    |||||||||  |||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  44487415 ttttcttcaaaatataaaattctcctcatttagaggaactaaaaaattgtattggaggag 44487356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 32820330 - 32820227
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||| | ||| |||||| ||||| | | | ||||| |||| ||||||||||| ||||||||||||  ||||||||| |||  |||||||| |||    
T  32820330 atttttcttcctaatacaaaattatcctcgtttggggaactaaaaagttgtattggagaagggttttgtgg-gttttggaggatttatatgaattcttca 32820232  T
Q  129 aattt 133  Q
    |||||    
T  32820231 aattt 32820227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 31180065 - 31179999
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||  |||||||| ||||||||| | ||| ||| ||||||||||||||||||| ||||||    
T  31180065 atttttcttcaaaatataaaactctcctcattt-gaggactaaaaaattgtattggaggagagttttg 31179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 42267106 - 42267039
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||| ||| |||| |||  |||| | ||||| |||||||||||||||||||| |||||||    
T  42267106 atttttcttcataatacaaaactcttatcatttggagaattcaaaaattgtattggaggaaggttttg 42267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 42620443 - 42620340
Alignment:
Q  37 tcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaat 136  Q
    |||| ||| ||||||| |||||| | | |||||||||||||||||||| ||||| ||||| ||  || |||||| |||  |||||||  ||||||| |||    
T  42620443 tcataataaaaaattcccctcatttggggaactcaaaaattgtattgggggaggattttgaggggttatggagggtttatatgaatttttcaaattcaat 42620344  T
Q  137 ctat 140  Q
    ||||    
T  42620343 ctat 42620340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 31055369 - 31055423
Alignment:
Q  42 atataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||  |||||||| | | ||||| ||||||||||||||||||||||||||    
T  31055369 atataaaaccctcctcatttggggaactaaaaaattgtattggaggagggttttg 31055423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 16805630 - 16805585
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    ||||| |||||||||||||||||||||||||| ||  |||||||||    
T  16805630 gaactaaaaaattgtattggaggagggttttggggggttttggagg 16805585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 33810277 - 33810244
Alignment:
Q  63 gagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||||||||||||| |||||||||||    
T  33810277 gagaactcaaaaattgtattgggggagggttttg 33810244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 38137913 - 38137986
Alignment:
Q  20 aggaggtccatttttcttcattatataaaattctcctcatat-agagaactcaaaaattgtattggaggagggt 92  Q
    ||||||| ||||||||||||| ||| ||||| |||||||| |  | || ||||||| |||||||||||||||||    
T  38137913 aggaggttcatttttcttcataatacaaaatcctcctcatttgggggagctcaaaatttgtattggaggagggt 38137986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 43741688 - 43741757
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatag-agaactcaaaaattgtattggaggagggttttgtgg 99  Q
    |||||||||| ||| |||| ||||||||| | | |||||||||||||||||||  |||||| ||||||||    
T  43741688 ttttcttcataatacaaaactctcctcatttgggagaactcaaaaattgtattaaaggaggattttgtgg 43741757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 44720107 - 44720135
Alignment:
Q  65 gaactcaaaaattgtattggaggagggtt 93  Q
    |||||||||||||||||||||||||||||    
T  44720107 gaactcaaaaattgtattggaggagggtt 44720135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 15615686 - 15615758
Alignment:
Q  66 aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatct 138  Q
    ||||||||||||||||||||| ||||||||  || |||||||||| |||  |||||||| |||||||||||||    
T  15615686 aactcaaaaattgtattggagaagggttttaagggattttggagggtttatatgaattcttcaaatttaatct 15615758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 26713844 - 26713912
Alignment:
Q  29 atttttcttcattatat-aaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||| |||  ||||| |||||||| | | ||||||||||||||||||||||||||||||||    
T  26713844 atttttcttcatgataagaaaatcctcctcatttggggaactcaaaaattgtattggaggagggttttg 26713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 33590425 - 33590310
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaa 130  Q
    |||||||||| ||| ||||  |||||||| | | || || ||||||||||||||| |||||||||| ||  ||||||||| ||   |||||||| |||||    
T  33590425 ttttcttcataatacaaaaccctcctcatttggggagctaaaaaattgtattggatgagggttttg-ggggttttggagggttaatatgaattcttcaaa 33590327  T
Q  131 tttaatctatgatatta 147  Q
    ||||||||||| |||||    
T  33590326 tttaatctatgttatta 33590310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 32221986 - 32222096
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    ||||||| || |||| ||| ||||||||| | ||| |||| ||||||||||||||||||| |||||  || |||||||||| |||  |||||||| ||||    
T  32221986 ttttctttataatatcaaactctcctcatttggaggaactaaaaaattgtattggaggagagtttt-agggattttggagggtttatatgaattcttcaa 32222084  T
Q  130 atttaatctatg 141  Q
    |||||| |||||    
T  32222085 atttaaactatg 32222096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 13380520 - 13380590
Alignment:
Q  28 catttttcttcattatataaaattctcctcatat--agagaactcaaaaattgtattggaggagggttttg 96  Q
    ||||||||||||| |||||||||  ||||||| |   | ||||||||||||||||||||| ||||||||||    
T  13380520 catttttcttcataatataaaatcatcctcatttggggggaactcaaaaattgtattggaagagggttttg 13380590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 24379617 - 24379684
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaa-ctcaaaaattgtattggaggagggttt 94  Q
    ||||||||||||  ||| ||||  |||||||| ||||||| |||||||||||||||| ||||||||||    
T  24379617 catttttcttcaaaatacaaaaccctcctcatttagagaaactcaaaaattgtattgaaggagggttt 24379684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 32719474 - 32719408
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  32719474 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 32719408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 5825350 - 5825426
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||| ||||||||| ||||||||||| || ||| |||||| |||  |||||||  | ||||| ||||||||    
T  5825350 gaactcaaaatttgtattgggggagggttttgggggattatggagggtttatatgaatttttgaaattcaatctatg 5825426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 12779532 - 12779607
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||| ||||||||||||||||||||| |  |||||||||| ||   | |||||| ||||||||||||||||    
T  12779532 gaactaaaaagttgtattggaggagggttttg-gagattttggagggttaataagaattcttcaaatttaatctatg 12779607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 26574458 - 26574382
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||| | |||  |||||||  ||||||| ||||||||    
T  26574458 gaactcaaaaattgtattgggggagggttttggggggttatggatggtttatatgaatttttcaaattcaatctatg 26574382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 31345433 - 31345358
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||  ||||||||||| || ||| |||||  |||  |||||||  ||||||||||||||||    
T  31345433 gaactcaaaaattgtattgagggagggttttg-gggattatggagagtttatatgaatttttcaaatttaatctatg 31345358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 30198869 - 30198758
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||| ||||||||| ||   | |||||| ||||    
T  30198869 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttgaggagttttggagggttaataagaattcttcaa 30198770  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  30198769 atttaatttatg 30198758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 28175562 - 28175482
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    |||||||||| ||| ||||| |||||||| | ||| |||| ||||||||||| |||||||||||||| || ||||||||||    
T  28175562 ttttcttcataatacaaaatcctcctcatttggaggaactaaaaaattgtataggaggagggttttgagggattttggagg 28175482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 38136897 - 38136821
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||| ||   | |||||| ||||||||||| ||||    
T  38136897 gaactaaaaaattgtattggaggagggttttgaggagttttggagggttaataagaattcttcaaatttaatttatg 38136821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 12708932 - 12708821
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||| ||||    
T  12708932 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttcaa 12708833  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  12708832 atttaatttatg 12708821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 15498870 - 15498783
Alignment:
Q  52 ctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatcta 139  Q
    |||||||| | | ||||||||||||||||||||| |||||||||| |   ||||||||| |||  |||||||| | ||||||||||||    
T  15498870 ctcctcatttggggaactcaaaaattgtattggatgagggttttgggcggttttggagggtttacatgaattctttaaatttaatcta 15498783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24279933 - 24280008
Alignment:
Q  66 aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||||||||||||    
T  24279933 aactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaatttaatctatg 24280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 42759714 - 42759640
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatcta 139  Q
    |||||||||||||||| | ||||||||||||| || || ||||||| |||  |||||||  ||||||||||||||    
T  42759714 gaactcaaaaattgtactagaggagggttttgagggatcttggagggtttacatgaatttttcaaatttaatcta 42759640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 7182254 - 7182178
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  7182254 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 7182178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 16535709 - 16535785
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||| | ||||| ||| |||||| |||||| |||  |||||||  ||||||||||||||||    
T  16535709 gaactaaaaaattgtattggggaagggtcttggggaattatggagggtttatatgaatttttcaaatttaatctatg 16535785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 9119885 - 9119818
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||  |||||||| ||||||||| | |  |||| ||| ||||||||||||||||||||||    
T  9119885 atttttcttcaaaatataaaactctcctcatttgggaaactaaaatattgtattggaggagggttttg 9119818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 3127074 - 3127044
Alignment:
Q  65 gaactcaaaaattgtattggaggagggtttt 95  Q
    |||||||||||||||||||||||||||||||    
T  3127074 gaactcaaaaattgtattggaggagggtttt 3127044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 29114331 - 29114265
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| ||||||||||||||||||||||||||    
T  29114331 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 29114265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 49668202 - 49668136
Alignment:
Q  31 ttttcttcattatataaaattctcctcatata-gagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| |||| |||  |||||||| || | ||||| ||||||||||||||||||||||||||    
T  49668202 ttttcttcataatattaaaccctcctcatttaagggaactaaaaaattgtattggaggagggttttg 49668136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 516045 - 516098
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtat 81  Q
    |||||||||||| ||| ||||||||||||||  |||| ||||||||||||||||    
T  516045 atttttcttcataatacaaaattctcctcattcagagaaactcaaaaattgtat 516098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 21296170 - 21296137
Alignment:
Q  63 gagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||||||||||||| |||||||||||    
T  21296170 gagaactcaaaaattgtattgggggagggttttg 21296137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 42650617 - 42650730
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatc 127  Q
    |||||||||||  ||||||||  |||||||| | | | |||| |||||||||||||||||||||||||| |   ||| ||| | |||  |||||||| ||    
T  42650617 atttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattgtattggaggagggttttgggaggtttgggatggtttatatgaattcttc 42650716  T
Q  128 aaatttaatctatg 141  Q
    ||||||||| ||||    
T  42650717 aaatttaatttatg 42650730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 48830879 - 48830846
Alignment:
Q  63 gagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||||||||||||| |||||||||||    
T  48830879 gagaactcaaaaattgtattgggggagggttttg 48830846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 20533945 - 20534021
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||  ||||||||    
T  20533945 gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaatccaatctatg 20534021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 32649063 - 32648991
Alignment:
Q  69 tcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||| ||||||||||| ||  || |||| | |||  |||||||  ||||||||||||||||    
T  32649063 tcaaaaattgtattgggggagggttttggggggttatggaaggtttatatgaatttttcaaatttaatctatg 32648991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 41363875 - 41363799
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || ||||||  ||  |||||||  ||||||| ||||||||    
T  41363875 gaactcaaaaattgtattgggggagggttttggggggttatggagggattatatgaatttttcaaattcaatctatg 41363799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 29022600 - 29022711
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggagg-tttttaatgaattcatc 127  Q
    |||||||||||  |||||||| ||||||||| ||  ||||| |||||||||||||||||| ||||||  |||||||  ||||  ||| ||||||||| ||    
T  29022600 atttttcttcaaaatataaaactctcctcatttaaggaactaaaaaattgtattggaggacggtttttgggaattt--gaggagtttaaatgaattcttc 29022697  T
Q  128 aaatttaatctatg 141  Q
    ||||||||| ||||    
T  29022698 aaatttaatatatg 29022711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 41694995 - 41695071
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| || ||| |||| | ||| ||||||||  ||||||| ||||||||    
T  41694995 gaactcaaaaattgtattgggggagggttttgagggattatggatggtttaaatgaatttttcaaattcaatctatg 41695071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 3925880 - 3925813
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||||| ||||| |||||||||||| | | ||||| ||||||||||||||| ||| ||||||    
T  3925880 atttttcttcatgatatagaattctcctcatttggggaactaaaaaattgtattggatgagagttttg 3925813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 13569346 - 13569455
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| |||||| ||||||| | ||| ||||  |||||| |||||||||||||||||| ||| ||||||||| ||   | |||||  ||||    
T  13569346 ttttcttcataatacaaaattttcctcatttggaggaactacaaaattatattggaggagggttttggggagttttggaggattaataagaatttttcaa 13569445  T
Q  130 atttaatcta 139  Q
    ||||||||||    
T  13569446 atttaatcta 13569455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 6491164 - 6491272
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcat 126  Q
    ||||||||||||| ||| |||||  ||||||| | | | ||||||||||||||||||||||| | ||||| ||  ||| ||||| |||  |||||||| |    
T  6491164 catttttcttcataatacaaaatcttcctcatttgggggaactcaaaaattgtattggaggaagattttggggtgtttcggagggtttatatgaattctt 6491263  T
Q  127 caaatttaa 135  Q
    |||||||||    
T  6491264 caaatttaa 6491272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 19389918 - 19389850
Alignment:
Q  28 catttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttg 96  Q
    ||||| ||||||| ||| ||||| |||||||| | | ||||| |||||||||||||||||||| |||||    
T  19389918 catttatcttcataatacaaaatcctcctcatttggggaactaaaaaattgtattggaggaggattttg 19389850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 1935165 - 1935094
Alignment:
Q  70 caaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||||| |||| ||  ||||||||| |||   ||||||| ||||||||||| ||||    
T  1935165 caaaaattgtattggaggagggctttggggggttttggagggtttatgtgaattcttcaaatttaatatatg 1935094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 17092916 - 17092991
Alignment:
Q  66 aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  17092916 aactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatg 17092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 10437969 - 10438035
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    ||||||| || ||| ||||| |||||||| ||||| |||| |||| |||||||||||||||||||||    
T  10437969 ttttctttataatacaaaatcctcctcatttagaggaactaaaaagttgtattggaggagggttttg 10438035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 37508490 - 37508424
Alignment:
Q  30 tttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggtttt 95  Q
    ||||| ||||| ||| ||||||| |||||| | ||| ||||||||||||||||||| ||||||||||    
T  37508490 tttttattcataataaaaaattcccctcatttggaggaactcaaaaattgtattgggggagggtttt 37508424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 43496960 - 43496895
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttt 94  Q
    ||||||||| || ||| |||| ||| ||||| | | ||||| ||||||||||||||||||||||||    
T  43496960 atttttcttaataatacaaaactctgctcatttggggaacttaaaaattgtattggaggagggttt 43496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 2020998 - 2021074
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  | ||||| ||||||||    
T  2020998 gaactcaaaaattgtattgggggagggttttgaggggttatggagggtttatatgaattttttaaattcaatctatg 2021074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 26149621 - 26149697
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||||||||||  |||||||||| ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  26149621 gaactcaaaaattgtattgggagagggttttgaggggttatggaggatttatatgaatttttcaaattcaatctatg 26149697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 27480235 - 27480159
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    |||||||||||||||||||| ||||||||||  ||  || |||||| |||  |||||||  ||||||| ||||||||    
T  27480235 gaactcaaaaattgtattgggggagggttttagggggttatggagggtttatatgaatttttcaaattcaatctatg 27480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 39649554 - 39649634
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggagg 110  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||||| ||||| ||  |||||||||    
T  39649554 ttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggaggattttggggggttttggagg 39649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 259 - 183
Alignment:
Q  65 gaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||| ||   | |||||| ||||||||||||||||    
T  259 gaactaaaaaattgtattggaggagggttttgcggggttttggagggttaataagaattcttcaaatttaatctatg 183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 35546 - 35442
Alignment:
Q  37 tcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaat 136  Q
    |||| ||| ||||||| |||||| | | |||||||||||||||||||| ||||||||||| ||  || |||||| |||  |||||||  ||||||| |||    
T  35546 tcataataaaaaattcccctcatttggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaat 35447  T
Q  137 ctatg 141  Q
    |||||    
T  35446 ctatg 35442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 15899 - 15978
Alignment:
Q  29 atttttcttcattatataaaattctcctcatatagagaactcaaaaattgtattggaggagggttttgtggaattttgga 108  Q
    |||||||||||| ||  |||| ||||||||| | | ||| | |||||||||||||||||||||||||| || ||||||||    
T  15899 atttttcttcataatgaaaaaatctcctcatttggggaatttaaaaattgtattggaggagggttttgggggattttgga 15978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 93604 - 93538
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttg 96  Q
    |||||||||| ||| |||| ||||||||| | ||| |||| ||||||||||||||||||||||||||    
T  93604 ttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattggaggagggttttg 93538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 2121 - 2010
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaa 129  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||||||||| || |||| ||| ||||||||| ||   | |||||| ||||    
T  2121 ttttcttcataatacaaaaccctcctcatttggaggaactgaaaaattgtattggaggaaggatttggggagttttggagggttaataagaattcttcaa 2022  T
Q  130 atttaatctatg 141  Q
    ||||||| ||||    
T  2021 atttaatttatg 2010  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 37145 - 37215
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaatctatg 141  Q
    ||||||||||||| | |||||||||| |  |||||||||| |||  |||||||| ||||||||||| ||||    
T  37145 aaaaattgtattgaatgagggttttgagagattttggagggtttatatgaattcttcaaatttaatatatg 37215  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 30478 - 30542
Alignment:
Q  71 aaaaattgtattggaggagggttttgtggaattttggaggtttttaatgaattcatcaaatttaa 135  Q
    ||||||||||||| | |||||||||| |  |||||||||| |||  |||||||| ||||||||||    
T  30478 aaaaattgtattgaatgagggttttgagagattttggagggtttatatgaattcttcaaatttaa 30542  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 26362 - 26474
Alignment:
Q  31 ttttcttcattatataaaattctcctcatatagag-aactcaaaaattgtatt-ggaggagggttttgtggaattttggaggtttttaatgaattcatca 128  Q
    |||||||||| ||| ||||  |||||||| | ||| |||| |||||||||||| |||||||||||||| ||  ||||||||| ||   | |||||| |||    
T  26362 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtatttggaggagggttttggggggttttggagggttaataagaattcttca 26461  T
Q  129 aatttaatctatg 141  Q
    |||||||| ||||    
T  26462 aatttaatttatg 26474  T

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