View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11331_low_11 (Length: 247)
Name: NF11331_low_11
Description: NF11331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11331_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 18315382 - 18315596
Alignment:
| Q |
18 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatgcaa |
117 |
Q |
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| T |
18315382 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatggaa |
18315481 |
T |
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| Q |
118 |
aaaacaataagagaattatcacaccgtaacaatattcttaacgcaacaaacctatgtaggactggcacttcatattgaagatgtcagttatccaacaaag |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18315482 |
aaaacaataagcaaattatcacaccgtaacaatattcttaacgcaacaaacttatgtaggactggcacttcatattgaagatgtcagttatccaacaaag |
18315581 |
T |
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| Q |
218 |
gcacctacaaaacac |
232 |
Q |
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|||||||| ||||| |
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| T |
18315582 |
acacctacataacac |
18315596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 18304769 - 18304926
Alignment:
| Q |
18 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatgcaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18304769 |
acatcacatctacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaattgaa |
18304868 |
T |
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| Q |
118 |
aaaacaataagagaattatcacaccgtaacaatattcttaacgcaacaaacctatgta |
175 |
Q |
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|||||||||| ||| ||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
18304869 |
gaaacaataagcaaatcatcacactgtaacaatactcttaacgtaacaaacctatgta |
18304926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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