View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11331_low_4 (Length: 486)
Name: NF11331_low_4
Description: NF11331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11331_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 27520103 - 27520564
Alignment:
| Q |
1 |
agcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520103 |
agcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaac |
27520202 |
T |
|
| Q |
101 |
cagtatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttcttccctaccatttgccattcatcctcttccatgtccc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520203 |
caatatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttcttccctaccatttgccattcatcctcttccatgtccc |
27520302 |
T |
|
| Q |
201 |
acattgtttcactccttaacaccattacaaaaaatcaatttaattttcaaggttaaaagaacaaacataccattggccacagttatttagagaaacctcg |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520303 |
acattgttgcactccttaacaccattacaaaaaatcaatttaattttcaaggttaaaagaacaaacataccattggccacagttatttagagaaacctcg |
27520402 |
T |
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| Q |
301 |
tac-aaaaaagttggtatggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttgtgataggtttatgtaca |
399 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520403 |
tacaaaaaaagttggtatggttggctagtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttgtgataggtttatgtaca |
27520502 |
T |
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| Q |
400 |
tgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaat |
461 |
Q |
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| T |
27520503 |
tgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaat |
27520564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27498668 - 27498942
Alignment:
| Q |
1 |
agcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaac |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||| |
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| T |
27498668 |
agcccaagtcctacaaactgtcatacctagtgaggatgcttgtttgaaaacctcagtgacttttcctctggtggagtcatctgcagcaaacatcattaac |
27498767 |
T |
|
| Q |
101 |
cagtatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttcttccctaccatttgccattcatcctcttccatgtccc |
200 |
Q |
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| T |
27498768 |
cagtatgtgttgaatccatttatatagaaaggctgaccattcaccacaaattggtttcctttcttccctaccatttgccattcatcctcttccatgtccc |
27498867 |
T |
|
| Q |
201 |
acattgtttcactccttaacaccattacaaaaaa-------tcaatttaattttcaaggttaaaagaacaaacata |
269 |
Q |
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| T |
27498868 |
acattgtttcacttc-taacaccattacaaaaaaccaatatttaattcaattttcaaggttaaaagaacaaacata |
27498942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 286 - 461
Target Start/End: Original strand, 27499235 - 27499413
Alignment:
| Q |
286 |
tttagagaaacctcgtacaaaaaagttggtat---ggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttg |
382 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
27499235 |
tttaaagaaacctcgtacaaaaaagttcgtatattggttggctagtaaatagtaatatagaacagctagagggtgcatgcatgatcatacccataatttg |
27499334 |
T |
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| Q |
383 |
tgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaat |
461 |
Q |
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| T |
27499335 |
tgataggtttatgtacatgatcttgtccttccttttgtgcctcttcatccaccctactaacagcattagaacttagaat |
27499413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 461
Target Start/End: Original strand, 27514161 - 27514200
Alignment:
| Q |
422 |
cctcttcatccaccctactaaaagcattagaacttagaat |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27514161 |
cctcttcatccaccctactaaaagcattagaacttagaat |
27514200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 281294 - 281131
Alignment:
| Q |
2 |
gcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaacc |
101 |
Q |
| |
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|||||||| |||||||||||||| || | ||||| ||| |||||||| |||| ||||| ||| ||| || || || || || ||||| | |||||||| |
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| T |
281294 |
gcccaagtcctacaaactgtcatgccaactgaggatgcatgtttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaacc |
281195 |
T |
|
| Q |
102 |
agtatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttctt |
165 |
Q |
| |
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| || | |||||||||||||| ||||||||| || |||||| |||||||||||||||||||| |
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| T |
281194 |
aataagtgttgaatccatttacatagaaaggttggtcattcactacaaattggtttcctttctt |
281131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 634558 - 634721
Alignment:
| Q |
2 |
gcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaacc |
101 |
Q |
| |
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|||||||| |||||||||||||| || | ||||| ||| |||||||| |||| ||||| ||| ||| || || || || || ||||| | |||||||| |
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| T |
634558 |
gcccaagtcctacaaactgtcatgccaactgaggatgcatgtttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaacc |
634657 |
T |
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| Q |
102 |
agtatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttctt |
165 |
Q |
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| || | |||||||||||||| ||||||||| || |||||| |||||||||||||||||||| |
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| T |
634658 |
aataagtgttgaatccatttacatagaaaggttggtcattcactacaaattggtttcctttctt |
634721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 820361 - 820524
Alignment:
| Q |
2 |
gcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgccgcaaacatcatcaacc |
101 |
Q |
| |
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|||||||| |||||||||||||| || | ||||| ||| |||||||| |||| ||||| ||| ||| || || || || || ||||| | |||||||| |
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| T |
820361 |
gcccaagtcctacaaactgtcatgccaactgaggatgcatgtttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaacc |
820460 |
T |
|
| Q |
102 |
agtatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttctt |
165 |
Q |
| |
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| || | |||||||||||||| ||||||||| || |||||| |||||||||||||||||||| |
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|
| T |
820461 |
aataagtgttgaatccatttacatagaaaggttggtcattcactacaaattggtttcctttctt |
820524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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