View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11332_high_1 (Length: 463)
Name: NF11332_high_1
Description: NF11332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11332_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 33543151 - 33543598
Alignment:
| Q |
1 |
cactgatttatcatccaatctgttggggaagttcttcagttttcatggtattttgttatgattgaacttttcttgtactttttgttggtttcctgtgaaa |
100 |
Q |
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| T |
33543151 |
cactgatttatcatccaatctgttggggaagttcttcagttttcatggtattttgttatgattgaacttttcttgtactttttgttggtttcctgtgaaa |
33543250 |
T |
|
| Q |
101 |
taatgaatttcatagtgttgagttataatgcttgaattcagttgattcttgcgaaaaaattatgtttgtttaaggtaacataacttcttgtaattgcagg |
200 |
Q |
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| T |
33543251 |
taatgaatttcatagtgttgagttataatgcttgaattcagttgattcttgcgaaaaaattatgtttgtttaaggtaacataacttcttgtaattgcagg |
33543350 |
T |
|
| Q |
201 |
gtttctgcttgtgtttcaaggcttcaattttgagagaactccaatgcttttgtagaatataatnnnnnnnnnnnnnnnnnnnnctatggtatctgtgttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
33543351 |
gtttctgcttgtgtttcaaggcttcaattttgagagaactccaatgcttctttagaatataataacaaaacaaaacaaaaacactatggtatctgtgttt |
33543450 |
T |
|
| Q |
301 |
tttgttttggttactattttactttctataaatcattcagaacagcttcaatcctcacacactcaaaccctcctaagaattcaacaacaattgaattttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543451 |
tttgttttggttactattttactttctataaatcattcagaacagcttcaatcctcacacactcaaaccctcctaagaattcaacaacaattgaattttc |
33543550 |
T |
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| Q |
401 |
cttcagctttaagcaattggaataactccacagatttttgcaacacag |
448 |
Q |
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| T |
33543551 |
cttcagctttaagcaattggaataactccacagatttttgcaacacag |
33543598 |
T |
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