View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11332_high_2 (Length: 402)
Name: NF11332_high_2
Description: NF11332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11332_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 23386116 - 23385778
Alignment:
| Q |
1 |
aacataatactatcgaaacataacccagattaatgttatactatatttgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgacct |
100 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386116 |
aacataatactatcgaaatataatccagattaatgttatactatatttgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgacct |
23386017 |
T |
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| Q |
101 |
taccaaattttgcagttcaatagctataccatagttcaaactcat---atatatcatcttattacaagtattcaatatgtttatgtattaaaactatgat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386016 |
taccaaattttgcagttcaatagctataccatagttcaaactcattatatatatcatcttattacaagtattcaatatgtttatgtattaaaactatgat |
23385917 |
T |
|
| Q |
198 |
tcgtcaaattgattagacattgataagaacattttagaatttgagtaggacttaacttaatatctttagaaaactggtttataaggctgagactatctcc |
297 |
Q |
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|||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
23385916 |
tcgttaaattgattagacattgataaaaatattttagaatttgagtaggacttaactcaatatctttagaaaactggtttgtaaggttgagactctctcc |
23385817 |
T |
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| Q |
298 |
acttataagcaaatgttcatgtcttacctcatgcaatgt |
336 |
Q |
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| T |
23385816 |
acttataagcaaatgttcatgtcttacctcatacaatgt |
23385778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 39577652 - 39577595
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
385 |
Q |
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| T |
39577652 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
39577595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 39592125 - 39592072
Alignment:
| Q |
332 |
aatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
385 |
Q |
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||||||||||||||| |||||||||||||| ||||| || |||||||||||||| |
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| T |
39592125 |
aatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac |
39592072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 39541788 - 39541732
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa |
384 |
Q |
| |
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||||||||||| ||||||||||||| ||||||| |||||| ||||| |||||||||| |
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| T |
39541788 |
atgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaaaa |
39541732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 39334771 - 39334828
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
385 |
Q |
| |
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|||||||| |||||||||||||||| ||||||| |||||| |||| ||||||||||| |
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| T |
39334771 |
atgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac |
39334828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 39346035 - 39346092
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
385 |
Q |
| |
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|||||||| |||||||||||||||| ||||||| |||||| |||| ||||||||||| |
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| T |
39346035 |
atgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac |
39346092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 39567836 - 39567779
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
385 |
Q |
| |
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||||||||||| ||||||||||||| ||||||| |||||| |||| ||||||||||| |
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| T |
39567836 |
atgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac |
39567779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 39551045 - 39550989
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa |
384 |
Q |
| |
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||||||||||| ||||||||||||| ||||||| |||||| ||||| || ||||||| |
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| T |
39551045 |
atgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa |
39550989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 39360579 - 39360637
Alignment:
| Q |
328 |
atgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaact |
386 |
Q |
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|||||||| |||||| ||||||||| ||||||| |||||| |||| |||||||||||| |
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| T |
39360579 |
atgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaact |
39360637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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