View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11332_high_4 (Length: 373)
Name: NF11332_high_4
Description: NF11332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11332_high_4 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 1496 - 1681
Alignment:
| Q |
30 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaggaatcaagctt |
129 |
Q |
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| T |
1496 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
1595 |
T |
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| Q |
130 |
tgtaacatctcatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtcagtgaac |
215 |
Q |
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| T |
1596 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtgagtgaac |
1681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 38296133 - 38296318
Alignment:
| Q |
30 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaggaatcaagctt |
129 |
Q |
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| T |
38296133 |
gttccttcatccacgtgattttatcatttgaaactgaatcaaacagaggtgtgtcgagaataaatgtcattgtctcagctgaaaacaaagaatcaagctt |
38296232 |
T |
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| Q |
130 |
tgtaacatctcatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtcagtgaac |
215 |
Q |
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| T |
38296233 |
tgtaacatcccatctgtgtttctccaacaatcattaaatcacaaacaaacaaattatgcacaccttgatttttgtggtgagtgaac |
38296318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 224 - 354
Target Start/End: Original strand, 45888301 - 45888431
Alignment:
| Q |
224 |
cctgtgtaccgtggtgtaagaaagagggattccgggaagtgggtttgcgaagtaagagaacctaacaagaaaaccagaatttggcttggaacattcccta |
323 |
Q |
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| T |
45888301 |
cctgtgtaccgtggtgtaagaaaaagggattccgggaagtgggtttgcgaagtaagagaacctaacaagaaaaccagaatttggcttggaacattcccta |
45888400 |
T |
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| Q |
324 |
caccggagatggcggcgcgtgcgcatgatgt |
354 |
Q |
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| T |
45888401 |
caccggagatggcggcgcgtgcgcatgatgt |
45888431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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