View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11333_high_1 (Length: 777)

Name: NF11333_high_1
Description: NF11333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11333_high_1
NF11333_high_1
[»] chr5 (8 HSPs)
chr5 (151-751)||(35309147-35309761)
chr5 (34-317)||(35304559-35304844)
chr5 (153-317)||(31185993-31186160)
chr5 (151-233)||(39040539-39040620)
chr5 (151-232)||(25213827-25213907)
chr5 (151-232)||(25277977-25278057)
chr5 (272-317)||(41951858-41951903)
chr5 (151-185)||(27405306-27405340)
[»] chr2 (3 HSPs)
chr2 (151-314)||(6016847-6017013)
chr2 (153-317)||(36316286-36316455)
chr2 (198-232)||(12015132-12015166)
[»] chr8 (4 HSPs)
chr8 (150-317)||(11080141-11080313)
chr8 (151-233)||(4678162-4678243)
chr8 (153-233)||(4676217-4676296)
chr8 (272-314)||(5690727-5690769)
[»] chr7 (4 HSPs)
chr7 (150-317)||(7737277-7737450)
chr7 (153-278)||(36647489-36647617)
chr7 (150-278)||(48821854-48821985)
chr7 (151-232)||(35130603-35130683)
[»] scaffold0263 (1 HSPs)
scaffold0263 (150-278)||(22919-23049)
[»] chr4 (3 HSPs)
chr4 (151-317)||(27510483-27510655)
chr4 (238-317)||(5444688-5444770)
chr4 (242-317)||(35783689-35783767)
[»] chr3 (4 HSPs)
chr3 (151-320)||(39091329-39091492)
chr3 (151-232)||(35610885-35610966)
chr3 (151-232)||(27825693-27825773)
chr3 (151-185)||(33785893-33785927)
[»] chr1 (1 HSPs)
chr1 (151-317)||(41418053-41418223)
[»] chr6 (2 HSPs)
chr6 (238-317)||(23306795-23306877)
chr6 (196-278)||(9231526-9231610)


Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 151 - 751
Target Start/End: Original strand, 35309147 - 35309761
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatattaaga--taccttct 248  Q
    |||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||  |||||  || ||| |    
T  35309147 tgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattacaatgataagagatagcttat 35309246  T
Q  249 aatgatgtggttacatctatatatactact---tgattaatgctaactagtatctaacatgtatctctaatataatcgtaatcggagaattttgattgat 345  Q
    ||||| ||||||||||||||||||||||||   ||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  35309247 aatgaggtggttacatctatatatactactatttgactaatgctaattagtatctaacatatatctctaatataatcataatcggagaattttgattgat 35309346  T
Q  346 catctaaagtaggtctcagttccaaatccttcatttcaactacatttttcattcatgagacttgaacttgaa-tcttacttaaataatttgaatccaatt 444  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  35309347 catctaaaataggtctcagttccaaatccttcatttcaactacgtttttcattcatgaaacttgaacttgaaatcttacttaaataattcgaatccaatt 35309446  T
Q  445 tctctcgtaccgacttaatatg------tgtaatttcttatttgttaatagtatccagcttcatttcacataagatgcga--atttgattcactgctatt 536  Q
    || |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  35309447 tcactcgtaccgacttaatatgaatatgtgtaatttcttatttgttaatagtatccagcttcatttcacataagatgcgataatttgattcactgctatt 35309546  T
Q  537 acttaaatttcaactcacatttttcaagcatagaaaaatgttttaaacttttggaatgatttgatttttcacaacctattattctcacacctcctaagca 636  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35309547 acttaaatttcaactcacattattcaagcatagaaaaatgttttaaacttttagaatgatttgatttttcacaacctattattctcacacctcctaagca 35309646  T
Q  637 caattctggctataagcagctccacctaatgagttgaatgacatgatggcaacaaagagtgactaaaatttcaagtatatatgtttataccaatgatagg 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35309647 caattctggctataagcagctccacctaatgagttgaatgacatgatggcaacaaagagtgactaaaatttcaagtatatatgtttataccaatgatagg 35309746  T
Q  737 tttagtaggtggtga 751  Q
    |||||||||||||||    
T  35309747 tttagtaggtggtga 35309761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 34 - 317
Target Start/End: Original strand, 35304559 - 35304844
Alignment:
Q  34 tctcaacattagataaagccattaaattgttattataaattttaatggagtttgtcttttgttttaattattacattggtgcaacgtaccaactgacttc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35304559 tctcaacattagataaagccattaaattgttattataaattttaatggagtttgtcttttgttttaattattacatcggtacaacgtaccaactgacttc 35304658  T
Q  134 tgttgatgattataatctgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaat 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||    
T  35304659 tgttgatgattataatgtgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatattataat 35304758  T
Q  234 attaag--ataccttctaatgatgtggttacatctatatatactacttgattaatgctaactagtatctaacatgtatctctaata 317  Q
      ||||  |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||    
T  35304759 gataagaaataccttctaatgaggtggttatatctatatatactacttgactaatgctaactagtatttaacatatatctcaaata 35304844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 31185993 - 31186160
Alignment:
Q  153 ttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatatta--agataccttctaa 250  Q
    |||||||||||||||| ||| ||||||||||||  ||  | | |  |||||||||||||||||||||||||||||||||||  ||  |||||||||||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactcata--atatttctattgatgataaaagtgaatattacaatgatatgagataccttctaa 31186090  T
Q  251 tgatgtggttacatctatatatactacttgat---taatgctaactagtatctaacatgtatctctaata 317  Q
    ||| ||||||||| ||||||||||||||  ||   || |||||||||||||||||||| |||||||||||    
T  31186091 tgaggtggttacaactatatatactactacataactagtgctaactagtatctaacatatatctctaata 31186160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 39040539 - 39040620
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaat 233  Q
    |||||||||||||||||| ||   |||||||||||  ||  | ||||||| ||||||||||||||||||||||||||||||||    
T  39040539 tgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaat 39040620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 25213907 - 25213827
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa 232  Q
    |||||||||||||||||| |||||| |||||||||  ||  ||| | ||| ||| |||||||||| ||||||||||||||||    
T  25213907 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25213827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 25278057 - 25277977
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa 232  Q
    |||||||||||||||||| |||||| |||||||||  ||  ||| | ||| ||| |||||||||| ||||||||||||||||    
T  25278057 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25277977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 41951858 - 41951903
Alignment:
Q  272 tactacttgattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||    
T  41951858 tactacttcactaatgctaactagtatctaacatatatctctaata 41951903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 27405306 - 27405340
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgaga 185  Q
    |||||||||||||||||| ||||||||||||||||    
T  27405306 tgttaggaaacatgatatccaatgaaggaatgaga 27405340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 314
Target Start/End: Original strand, 6016847 - 6017013
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatatta--agataccttct 248  Q
    |||||||||||||||||| ||||||||||||| ||| ||  |   |||||||||||||||||||||||||||||| |||||||  ||  |||||||||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaact--cagaatatttctattgatgataaaagtgaatgttacaatgataagagataccttct 6016944  T
Q  249 aatgatgtggttacatctatata---tactacttgattaatgctaactagtatctaacatgtatctcta 314  Q
    ||||| |||||||||||||||||   |||||||||| ||||||||||||||||||||||| ||||||||    
T  6016945 aatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctcta 6017013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 36316286 - 36316455
Alignment:
Q  153 ttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatatta--agataccttctaa 250  Q
    |||||||||||||||| ||||||||||||||||  ||  | ||| ||||||||||||||||||||||||||||||||||||  ||  |||||||||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaatgatatgagataccttctaa 36316385  T
Q  251 tgatgtggttacatctatatatactact---tgattaatgctaactagtatctaacatgtatctctaata 317  Q
    ||| ||||||||| ||||||||||||||   | | || |||||||||||||||||||| |||||||||||    
T  36316386 tgaggtggttacaactatatatactactatataactagtgctaactagtatctaacatatatctctaata 36316455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 12015166 - 12015132
Alignment:
Q  198 aatatttctattgatgataaaagtgaatattacaa 232  Q
    ||||||| |||||||||||||||||||||||||||    
T  12015166 aatatttgtattgatgataaaagtgaatattacaa 12015132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 11080313 - 11080141
Alignment:
Q  150 ctgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatattaaga--taccttc 247  Q
    ||||||||||||||||||| ||||||| ||||||||| ||  |  ||||||||||||||| ||||||||||||||||||| |||  |||||  |||||||    
T  11080313 ctgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatattaaaatgataagagataccttc 11080214  T
Q  248 taatgatgtggttacatctatatatactact---tgattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||| || ||||| |||||||||||||||   |||  |||||||||||||||||||||| |||||||||||    
T  11080213 taatgaggtagttacttctatatatactactacttgacaaatgctaactagtatctaacatatatctctaata 11080141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 4678243 - 4678162
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaat 233  Q
    |||||||||||||||||| ||  ||||||||||||  ||  | ||||||||||||||||||||||||||||||||||||||||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaat 4678162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 4676296 - 4676217
Alignment:
Q  153 ttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaat 233  Q
    |||||||||||||||| ||  ||||||||||||  ||  | ||||||||||||||||||||||||||||||||||||||||    
T  4676296 ttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaat 4676217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 5690769 - 5690727
Alignment:
Q  272 tactacttgattaatgctaactagtatctaacatgtatctcta 314  Q
    |||||||| | ||||||||||||||||||||||| ||||||||    
T  5690769 tactacttcactaatgctaactagtatctaacatatatctcta 5690727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 7737450 - 7737277
Alignment:
Q  150 ctgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattac-aatatta--agatacctt 246  Q
    ||||||||||||||||||| ||||||||||||||||  ||  | ||||||| ||||||||||||||||||||||||||||| |||  ||  ||||| |||    
T  7737450 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagagatatctt 7737351  T
Q  247 ctaatgatgtggttacatctatatatactact---tgattaatgctaactagtatctaacatgtatctctaata 317  Q
    ||||||| ||| |||||  |||||||||||||   ||| |||| |||||||||||||||| | |||||||||||    
T  7737350 ctaatgaggtgattacaattatatatactactacatgactaatactaactagtatctaacctatatctctaata 7737277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 36647489 - 36647617
Alignment:
Q  153 ttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatatta-caatatta--agataccttcta 249  Q
    |||| ||||||||||| ||||||| ||||||||  ||  |||||||||||||||||||||||||||| ||||||| |  |||  ||  ||||||||||||    
T  36647489 ttagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatataagaaatgataagagataccttcta 36647588  T
Q  250 atgatgtggttacatctatatatactact 278  Q
    |||| |||||| || ||||||||| ||||    
T  36647589 atgaggtggtttcaactatatatagtact 36647617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 278
Target Start/End: Original strand, 48821854 - 48821985
Alignment:
Q  150 ctgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattac-aatatt--aagatacctt 246  Q
    |||||| |||||||||||| ||  |||| |||||||  ||  | ||||||| ||||||||||||||||| ||||||||||| |||  |  ||||| ||||    
T  48821854 ctgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaatggtaaaagatgcctt 48821953  T
Q  247 ctaatgatgtggttacatctatatatactact 278  Q
    ||||| | ||||||||| ||||||||||||||    
T  48821954 ctaataaggtggttacaactatatatactact 48821985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 35130683 - 35130603
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa 232  Q
    |||||||||||||||||| ||||||||||||||||  ||  | | | ||| ||| |||||||||| ||||||||||||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaa 35130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 23049 - 22919
Alignment:
Q  150 ctgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatattaaga--taccttc 247  Q
    ||||||||||||||||||| ||||||||||||||||  ||  | | | ||||||||||||||||||||||||||||||||||||  |||||  |||||||    
T  23049 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaatgataagagctaccttc 22950  T
Q  248 taatgatgtggttacatctatatatactact 278  Q
    |||||| |||||||||  |||||||||||||    
T  22949 taatgaggtggttacaagtatatatactact 22919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 27510483 - 27510655
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa--tat-taagataccttc 247  Q
    |||||||||||||||||| ||||||||||||||||  ||  | ||||||| |||||||||||||||||||||||||||||||   ||  ||| | |||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgatcaaaggttccttc 27510582  T
Q  248 taatgatgtggttacatctatata---tactacttgattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||| ||| ||||| |||||||   |||||| ||| |||| |||||||||||||||| | |||||||||||    
T  27510583 taatgaggtgattacaactatatacactactacatgactaatactaactagtatctaacctatatctctaata 27510655  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 5444770 - 5444688
Alignment:
Q  238 agataccttctaatgatgtggttacatctatatatac---tacttgattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||||||||||||| ||||||||| ||||||||||   ||||| | |||| ||||||| | |||||||| |||||||||||    
T  5444770 agataccttctaatgaggtggttacaactatatatactactacttaactaatactaactaatctctaacatatatctctaata 5444688  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 35783767 - 35783689
Alignment:
Q  242 accttctaatgatgtggttacatctatatatac---tacttgattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||||||||| ||||||||| ||||||||||   ||||| | |||| ||||||| |||||||||| |||||||||||    
T  35783767 accttctaatgaggtggttacaactatatatactactacttaactaatactaactaatatctaacatatatctctaata 35783689  T

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Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 39091329 - 39091492
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaatatt--aagataccttct 248  Q
    ||||| |||||||||||| ||||||||||||||||  ||  | | | ||||||||||||||||||| ||||||||||||||||  |  ||||||||||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaatgataaaagataccttct 39091428  T
Q  249 aatgatgtggttacatctatatatactacttgattaatgctaactagtatctaacatgtatctctaatataa 320  Q
     |||| |||||||||  ||||||||||||        | | |||||||||||||||| ||||||||||||||    
T  39091429 gatgaggtggttacaaatatatatactac--------tacaaactagtatctaacatatatctctaatataa 39091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 35610966 - 35610885
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa 232  Q
    |||||||||||||||||| ||||||||||||||||  ||  | | |||||| ||||||||||||||||| |||| |||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaa 35610885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 27825693 - 27825773
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaa 232  Q
    |||||||||||||||||| ||||||||||||||||  ||  | | | ||| ||| |||||||||| ||||||||||||||||    
T  27825693 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 27825773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 33785927 - 33785893
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgaga 185  Q
    |||||||||||||||||| ||||||||||||||||    
T  33785927 tgttaggaaacatgatatccaatgaaggaatgaga 33785893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 151 - 317
Target Start/End: Complemental strand, 41418223 - 41418053
Alignment:
Q  151 tgttaggaaacatgatattcaatgaaggaatgagaagaattttagagaatatttctattgatgataaaagtgaatattacaat--atta-agataccttc 247  Q
    |||||||||||||||||| |||||||||||| ||| |||   || ||| | |||| ||||||||||||||||||||||||||   || | |||| |||||    
T  41418223 tgttaggaaacatgatatccaatgaaggaattaga-gaaaacta-agattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 41418126  T
Q  248 taatgatgtggttacatctatatatactacttgat---taatgctaactagtatctaacatgtatctctaata 317  Q
    |||||| ||||||| | ||||||||||||||| ||   || |||||||||||||||||||| |||||||||||    
T  41418125 taatgaggtggttagaactatatatactactttatgactagtgctaactagtatctaacatatatctctaata 41418053  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 23306877 - 23306795
Alignment:
Q  238 agataccttctaatgatgtggttacatctatatatactactt---gattaatgctaactagtatctaacatgtatctctaata 317  Q
    |||||||||||||||| ||||| ||| || | ||||||||||   || ||||||||||||||||||||||| |||||||||||    
T  23306877 agataccttctaatgaggtggtgacaactttctatactactttgtgactaatgctaactagtatctaacatatatctctaata 23306795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 9231610 - 9231526
Alignment:
Q  196 agaatatttctattgatgataaaagtgaatattacaa-tattaagata-ccttctaatgatgtggttacatctatatatactact 278  Q
    ||||| ||||||||||||||||||||||||||||||| |  ||||| | || |||||||| |||| |||| ||||||||||||||    
T  9231610 agaatctttctattgatgataaaagtgaatattacaagtgataagagatccctctaatgaggtggctacaactatatatactact 9231526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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