View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11333_high_6 (Length: 316)
Name: NF11333_high_6
Description: NF11333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11333_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 28783466 - 28783194
Alignment:
| Q |
23 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783466 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
28783367 |
T |
|
| Q |
123 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783366 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
28783267 |
T |
|
| Q |
223 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccacaggttc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28783266 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttc |
28783194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 288
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
106 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
|
| Q |
206 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
288 |
Q |
| |
|
|||| || ||| |||||||||||||||| ||||||| |||| || |||||| |||||||||||||| |||| || |||||| |
|
|
| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 28783532 - 28783448
Alignment:
| Q |
23 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
107 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| |
|
|
| T |
28783532 |
aacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 28783624 - 28783553
Alignment:
| Q |
30 |
tcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
101 |
Q |
| |
|
|||||||||||||||| | ||| | |||||| ||||||| ||||| ||||| ||| | |||||||||||||| |
|
|
| T |
28783624 |
tcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
28783553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 28783499 - 28783421
Alignment:
| Q |
23 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
101 |
Q |
| |
|
||||||| ||||||||| ||||| ||| | |||||||| ||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
28783499 |
aacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctcc |
28783421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 28783578 - 28783514
Alignment:
| Q |
43 |
cctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
107 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| ||||| || | |||||||||||||| ||||| |
|
|
| T |
28783578 |
cctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgt |
28783514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University